View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14231_low_36 (Length: 253)

Name: NF14231_low_36
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14231_low_36
NF14231_low_36
[»] chr2 (19 HSPs)
chr2 (1-234)||(37497091-37497329)
chr2 (80-231)||(37498680-37498830)
chr2 (38-150)||(18840953-18841064)
chr2 (17-96)||(37491848-37491927)
chr2 (38-148)||(2438661-2438770)
chr2 (42-88)||(45000847-45000893)
chr2 (36-88)||(18570978-18571030)
chr2 (36-88)||(31026701-31026753)
chr2 (94-149)||(40361678-40361733)
chr2 (38-128)||(5367200-5367289)
chr2 (114-152)||(21616828-21616866)
chr2 (106-152)||(37419829-37419875)
chr2 (35-72)||(10250731-10250768)
chr2 (38-151)||(15972881-15972993)
chr2 (95-156)||(26769586-26769647)
chr2 (97-150)||(42511322-42511375)
chr2 (38-150)||(30404790-30404901)
chr2 (36-152)||(34006928-34007044)
chr2 (36-72)||(40681988-40682024)
[»] chr7 (19 HSPs)
chr7 (11-150)||(598189-598327)
chr7 (38-150)||(21880160-21880271)
chr7 (38-149)||(22484033-22484143)
chr7 (36-111)||(2982114-2982189)
chr7 (96-146)||(40287306-40287356)
chr7 (95-152)||(5409769-5409826)
chr7 (11-72)||(31808526-31808586)
chr7 (36-85)||(38134410-38134459)
chr7 (17-149)||(20549778-20549909)
chr7 (97-152)||(9778571-9778626)
chr7 (33-139)||(12278838-12278943)
chr7 (31-89)||(21247736-21247794)
chr7 (84-150)||(43027404-43027469)
chr7 (79-152)||(7438766-7438838)
chr7 (79-152)||(33994261-33994333)
chr7 (35-72)||(44172907-44172944)
chr7 (36-88)||(2525845-2525897)
chr7 (40-88)||(9482944-9482992)
chr7 (79-151)||(15680858-15680929)
[»] chr6 (24 HSPs)
chr6 (38-152)||(28715303-28715416)
chr6 (42-150)||(7377991-7378098)
chr6 (38-148)||(7265535-7265644)
chr6 (60-152)||(12236688-12236780)
chr6 (79-147)||(32978842-32978909)
chr6 (38-149)||(33419181-33419292)
chr6 (79-153)||(10339051-10339124)
chr6 (5-149)||(9658854-9658998)
chr6 (79-152)||(18367896-18367968)
chr6 (38-150)||(28152107-28152217)
chr6 (38-150)||(34595142-34595253)
chr6 (36-147)||(12235462-12235572)
chr6 (38-88)||(9617442-9617492)
chr6 (33-94)||(30851605-30851664)
chr6 (79-152)||(4877992-4878063)
chr6 (106-147)||(9025448-9025489)
chr6 (39-88)||(9629392-9629441)
chr6 (9-126)||(12627779-12627896)
chr6 (41-150)||(13360313-13360420)
chr6 (35-71)||(2140499-2140535)
chr6 (40-88)||(9024177-9024225)
chr6 (41-97)||(10157995-10158051)
chr6 (38-118)||(12627549-12627628)
chr6 (38-106)||(19040360-19040427)
[»] chr3 (21 HSPs)
chr3 (60-152)||(40993273-40993364)
chr3 (16-94)||(20691305-20691383)
chr3 (39-150)||(20503474-20503584)
chr3 (4-148)||(24204983-24205126)
chr3 (95-150)||(27505315-27505370)
chr3 (95-154)||(29508514-29508573)
chr3 (40-149)||(8789489-8789599)
chr3 (36-93)||(40150567-40150624)
chr3 (95-152)||(41961577-41961634)
chr3 (33-118)||(45451556-45451640)
chr3 (37-110)||(48202248-48202321)
chr3 (95-152)||(49651714-49651771)
chr3 (33-89)||(13807172-13807228)
chr3 (38-150)||(55401083-55401194)
chr3 (67-150)||(8842366-8842448)
chr3 (33-111)||(25093505-25093582)
chr3 (10-72)||(32384380-32384442)
chr3 (38-150)||(11251986-11252095)
chr3 (79-152)||(14209173-14209245)
chr3 (79-151)||(27903686-27903758)
chr3 (106-150)||(34185052-34185096)
[»] chr1 (25 HSPs)
chr1 (11-150)||(38078601-38078739)
chr1 (4-152)||(2896059-2896206)
chr1 (38-153)||(5898203-5898317)
chr1 (79-152)||(9828104-9828176)
chr1 (36-148)||(11412709-11412821)
chr1 (22-117)||(19637760-19637854)
chr1 (38-149)||(40258874-40258984)
chr1 (95-148)||(17778617-17778670)
chr1 (38-150)||(36878469-36878585)
chr1 (38-151)||(37598840-37598951)
chr1 (82-150)||(18556385-18556452)
chr1 (38-150)||(22515827-22515938)
chr1 (60-148)||(29163323-29163410)
chr1 (36-151)||(40747706-40747826)
chr1 (39-150)||(18337338-18337448)
chr1 (79-150)||(32461393-32461463)
chr1 (79-150)||(47989557-47989627)
chr1 (79-145)||(351023-351089)
chr1 (106-152)||(22881565-22881611)
chr1 (95-152)||(40917824-40917881)
chr1 (79-151)||(1815306-1815377)
chr1 (36-72)||(11571591-11571627)
chr1 (4-88)||(20157351-20157435)
chr1 (33-96)||(25452143-25452204)
chr1 (79-151)||(31694638-31694709)
[»] chr5 (14 HSPs)
chr5 (38-148)||(30502330-30502439)
chr5 (38-148)||(30542673-30542782)
chr5 (79-152)||(43564930-43565002)
chr5 (37-88)||(17925173-17925224)
chr5 (37-100)||(39424648-39424711)
chr5 (36-87)||(43208276-43208327)
chr5 (38-88)||(3966511-3966561)
chr5 (38-148)||(21190998-21191107)
chr5 (38-152)||(28588612-28588725)
chr5 (3-77)||(41600871-41600945)
chr5 (23-72)||(11596472-11596521)
chr5 (38-119)||(23012379-23012459)
chr5 (38-150)||(21576685-21576796)
chr5 (36-88)||(28296334-28296386)
[»] chr4 (29 HSPs)
chr4 (38-150)||(8423658-8423769)
chr4 (36-152)||(18513173-18513294)
chr4 (38-150)||(23292926-23293037)
chr4 (36-150)||(24343513-24343632)
chr4 (79-149)||(30982808-30982877)
chr4 (5-95)||(33950111-33950201)
chr4 (79-152)||(22234817-22234889)
chr4 (79-152)||(24613628-24613700)
chr4 (11-71)||(12077809-12077869)
chr4 (38-150)||(35157925-35158036)
chr4 (106-150)||(37203327-37203371)
chr4 (39-147)||(46715416-46715524)
chr4 (17-93)||(56049864-56049939)
chr4 (95-150)||(715545-715600)
chr4 (95-150)||(752871-752926)
chr4 (33-72)||(5654608-5654647)
chr4 (36-87)||(43299973-43300024)
chr4 (33-112)||(48139267-48139345)
chr4 (38-128)||(7214488-7214573)
chr4 (5-71)||(34515892-34515958)
chr4 (35-72)||(10546153-10546190)
chr4 (84-149)||(14465006-14465070)
chr4 (84-153)||(17876219-17876288)
chr4 (37-150)||(21345473-21345585)
chr4 (79-152)||(53381528-53381601)
chr4 (40-88)||(5225614-5225662)
chr4 (36-84)||(14465299-14465347)
chr4 (106-150)||(16886682-16886726)
chr4 (38-150)||(40179576-40179687)
[»] chr8 (22 HSPs)
chr8 (107-154)||(27213601-27213648)
chr8 (3-150)||(33405324-33405470)
chr8 (37-150)||(39820436-39820547)
chr8 (38-150)||(14134707-14134818)
chr8 (57-128)||(44462157-44462227)
chr8 (57-128)||(44469690-44469760)
chr8 (38-148)||(3025559-3025668)
chr8 (37-94)||(12985399-12985456)
chr8 (33-93)||(12606825-12606885)
chr8 (106-150)||(15816058-15816102)
chr8 (79-150)||(14513108-14513179)
chr8 (79-150)||(22652036-22652106)
chr8 (79-150)||(29447504-29447574)
chr8 (38-148)||(926730-926839)
chr8 (34-72)||(7616866-7616904)
chr8 (38-146)||(12559044-12559157)
chr8 (79-152)||(29510231-29510303)
chr8 (33-86)||(31236580-31236633)
chr8 (34-86)||(3508056-3508108)
chr8 (38-150)||(4786278-4786389)
chr8 (33-85)||(28819194-28819246)
chr8 (37-77)||(34201058-34201098)
[»] scaffold0003 (1 HSPs)
scaffold0003 (95-150)||(241669-241724)
[»] scaffold0050 (1 HSPs)
scaffold0050 (38-147)||(70286-70394)
[»] scaffold0652 (1 HSPs)
scaffold0652 (33-149)||(403-518)
[»] scaffold0793 (1 HSPs)
scaffold0793 (95-150)||(4821-4876)
[»] scaffold0571 (1 HSPs)
scaffold0571 (25-68)||(7685-7728)
[»] scaffold0086 (1 HSPs)
scaffold0086 (79-150)||(2988-3058)
[»] scaffold0019 (1 HSPs)
scaffold0019 (79-152)||(71785-71857)
[»] scaffold0598 (1 HSPs)
scaffold0598 (11-71)||(8071-8131)
[»] scaffold0011 (1 HSPs)
scaffold0011 (37-89)||(240021-240073)
[»] scaffold0007 (1 HSPs)
scaffold0007 (4-72)||(225285-225353)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37497091 - 37497329
Alignment:
Q  1 attggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacac 100  Q
    ||||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37497091 attggacacaaaacaaacactgacacatcgacactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacac 37497190  T
Q  101 atgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtgacatgtggcttttatat-----tcaaatatcaaaacaaacagaaaaa 195  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||    
T  37497191 atgttcggcaccgggacatggctaatcccagaagtgtccgtgcttcataggtgacatgtggcttttatattcaaatcaaatatcaaaacaaacagaaaaa 37497290  T
Q  196 tattctttaggttggtggcacaattgctaaaatatttgt 234  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37497291 tattctttaggttggtggcacaattgctaaaatatttgt 37497329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 37498680 - 37498830
Alignment:
Q  80 gtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtgacatgtggcttttatattcaaatatc 179  Q
    |||||||||| ||| ||||||||||| |||||   |||||||||||| | || || ||  ||||| |||| |||||||||| ||||||| ||||||||||    
T  37498680 gtcggtgtcaaacatcgacacatgtttgacacaaagacatggctaattcgagtagcgtttgtgct-catacgtgacatgtgacttttatcttcaaatatc 37498778  T
Q  180 aaaacaaacagaaaaatattct-ttaggttggtggcacaattgctaaaatatt 231  Q
    || ||||| |  |||||||| | ||||||||||||||||||| ||||||||||    
T  37498779 aagacaaataataaaatattgtcttaggttggtggcacaatt-ctaaaatatt 37498830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 18841064 - 18840953
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||| | |||||| | |  |||||||||||||||| ||||||||| |||||||||||||   ||||||| || |||||    
T  18841064 taataatttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacac-gacacatgtccgacaccgggacacacctaatccgaggagtgt 18840966  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  18840965 ccgtgcttcatag 18840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 37491927 - 37491848
Alignment:
Q  17 acactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccg 96  Q
    |||||||||||||| ||||||||| | |||||||||||  |  ||||||||||||| | || ||||||||||||||||||    
T  37491927 acactgacacatcgatactgataaaattttgagaaaataacttaattcaatgtaattaaatgtgtcggtgtcagacaccg 37491848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 2438770 - 2438661
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||| | |||||  || |||||| |||||| | |  |||||||||| ||||| ||||||||| ||||||||||||| | ||||||| || |||||    
T  2438770 taataatttcaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgt 2438672  T
Q  138 ccgtgcttcat 148  Q
    |||||||||||    
T  2438671 ccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 45000893 - 45000847
Alignment:
Q  42 aatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||    
T  45000893 aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgtc 45000847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 18570978 - 18571030
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||| |||||    
T  18570978 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 18571030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 31026701 - 31026753
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    ||||||||||| |||||||| || ||||||||||||| |||| ||||||||||    
T  31026701 gataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtc 31026753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 40361733 - 40361678
Alignment:
Q  94 ccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcata 149  Q
    |||||| ||||||||||||| ||||||| || ||  ||||||||||||||||||||    
T  40361733 ccgacatatgttcgacaccgagacatggttagtctaagaagtgtccgtgcttcata 40361678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 5367200 - 5367289
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcc 128  Q
    |||||||||||| ||||  || |||||| |||||| |||| |||||||||| |||| |||||||| | |||| |||||||| | |||||||    
T  5367200 taataatttgaggaaatcacataattcagtgtaattatatgtgtcggtgtcggaca-cgacacatatccgactccgggacacgcctaatcc 5367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 21616828 - 21616866
Alignment:
Q  114 ggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  21616828 ggacacggctaatccaagaagtgtccgtgcttcataggt 21616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 37419829 - 37419875
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||||    
T  37419829 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggt 37419875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 10250731 - 10250768
Alignment:
Q  35 tgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  10250731 tgataataatttgagaaaataacacaattcaatgtaat 10250768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 15972881 - 15972993
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  ||||||||| |||||| | |  |||||||||| |||| |||||| ||| |||| ||||||||   ||||||| |  | |||    
T  15972881 taataatttgaaaaaattacacaattcagtgtaattacaagtgtcggtgtcggaca-cgacacgtgtccgacgccgggacacacctaatccgaagaatgt 15972979  T
Q  138 ccgtgcttcatagg 151  Q
    ||||||||||||||    
T  15972980 ccgtgcttcatagg 15972993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 26769586 - 26769647
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtgaca 156  Q
    |||||| ||| |||||| |||||| | ||||||| || |||||||||||||||||| |||||    
T  26769586 cgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagatgaca 26769647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 42511375 - 42511322
Alignment:
Q  97 acacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||| ||| |||||| |||||| ||||||||| || ||||||||||||||||||    
T  42511375 acacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 30404901 - 30404790
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  |||||| ||| ||||| ||||||||| ||||||| ||||||| ||||||  ||||| ||    
T  30404901 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggcgtcggacac-gacacatgtccgacaccaggacatgcctaatctgagaagcgt 30404803  T
Q  138 ccgtgcttcatag 150  Q
      |||||||||||    
T  30404802 ttgtgcttcatag 30404790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 34007044 - 34006928
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagt 135  Q
    ||||||||||||||||| || || |||||| |||||| |||  |||||||||  |||||| |  | |||  |||||||| |||   ||||| | || |||    
T  34007044 gataataatttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagt 34006945  T
Q  136 gtccgtgcttcataggt 152  Q
    |||||||||||||||||    
T  34006944 gtccgtgcttcataggt 34006928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 40681988 - 40682024
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaat 72  Q
    |||||||||||||||||||| || |||||||||||||    
T  40681988 gataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 598189 - 598327
Alignment:
Q  11 acacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgaca 110  Q
    ||||| ||||||||||||||  || | ||||||||| |||||||  |  |||| ||||||||  ||  |||||||||||||||| ||||| ||| |||||    
T  598189 acacggacactgacacatcgacaccgctaataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacac-gacacgtgtccgaca 598287  T
Q  111 ccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||| | ||||||| |||||||||||||||||||||    
T  598288 ccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 21880160 - 21880271
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| | |  |||||||||| ||||| ||||||||| ||||||| ||||| | ||||||| ||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaatccgagaagtgt 21880258  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  21880259 ccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 22484033 - 22484143
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||| |||||||  || |||||| | |||| |||| |||||||||||||||  ||||||||| ||||| || |||||| || |||| ||||||||    
T  22484033 taataattttagaaaattgcataattcagtataattatatgtgtcggtgtcagacat-gacacatgtccgacatcgagacatgtctgatccgagaagtgt 22484131  T
Q  138 ccgtgcttcata 149  Q
    ||||||||||||    
T  22484132 ccgtgcttcata 22484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 2982114 - 2982189
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacac 111  Q
    ||||||||| |||||||||| || |||||||| |||| | |||||| |||||| ||||||||||| |||| |||||    
T  2982114 gataataatctgagaaaatgtcataattcaatctaatcacatctgttggtgtctgacaccgacacttgttagacac 2982189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 40287356 - 40287306
Alignment:
Q  96 gacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttc 146  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||||||||||    
T  40287356 gacacatgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 5409826 - 5409769
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||||||    
T  5409826 cgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggt 5409769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 31808586 - 31808526
Alignment:
Q  11 acacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    |||||||||||||||| |||  || |||||||||||||||||||| ||||| ||||||||||    
T  31808586 acacgaacactgacacgtcgc-accgataataatttgagaaaatgacacaagtcaatgtaat 31808526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 38134459 - 38134410
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggt 85  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||||    
T  38134459 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 20549778 - 20549909
Alignment:
Q  17 acactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccggga 116  Q
    ||||||||||| ||  || | |||||||||||||||||  |  |||||| |||||| |||| |||||||||| |||| | |||||||| |||||  | ||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggaca-caacacatgtccgacaatgaga 20549876  T
Q  117 catggctaatcccagaagtgtccgtgcttcata 149  Q
    || | ||||||| || |||| ||||||||||||    
T  20549877 cacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 9778571 - 9778626
Alignment:
Q  97 acacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||| ||| ||||||||||||| | ||||||| || ||||||||||||||||||||    
T  9778571 acacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcataggt 9778626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 12278838 - 12278943
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccaga 132  Q
    |||||||||||||| |||||||| || |||||| |||||| |||| |||| ||||| |||||| || | |||  ||||||||||||   ||||||| ||     
T  12278838 actgataataatttaagaaaatgacataattcagtgtaattatatgtgtc-gtgtcggacaccaacgcgtgtctgacaccgggacacacctaatcctagg 12278936  T
Q  133 agtgtcc 139  Q
    |||||||    
T  12278937 agtgtcc 12278943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 89
Target Start/End: Complemental strand, 21247794 - 21247736
Alignment:
Q  31 gtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtca 89  Q
    ||||||||||||||||||||||||| |  ||||||||||||| || | ||| |||||||    
T  21247794 gtactgataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgtca 21247736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 43027469 - 43027404
Alignment:
Q  84 gtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||||| ||||| ||| ||||||||||||| | ||||||| |  ||||||||||||||||||    
T  43027469 gtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 7438766 - 7438838
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    ||||||||||| |||| ||||||||| ||||||  ||||| | ||||| | || ||||||||||||||||||||    
T  7438766 tgtcggtgtcaaacac-gacacatgtgcgacactaggacacgcctaattcaaggagtgtccgtgcttcataggt 7438838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 33994261 - 33994333
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    ||||||||||||||| |||||||||| | |||||| |||| | ||||||| || ||||| |||| |||||||||    
T  33994261 tgtcggtgtcagaca-cgacacatgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcataggt 33994333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 44172944 - 44172907
Alignment:
Q  35 tgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||||||||||||||||||| || |||||||||||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaat 44172907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 2525897 - 2525845
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||| ||||| || |||||||| |||| |||| ||||||||||    
T  2525897 gataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtc 2525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 9482944 - 9482992
Alignment:
Q  40 ataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||  ||||||||| |||||| |||| ||||||||||    
T  9482944 ataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtc 9482992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 15680858 - 15680929
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatagg 151  Q
    |||||||||| ||||| ||||| ||| |||||||| |||| | ||||| | || |||||||||||||||||||    
T  15680858 tgtcggtgtcggacac-gacacgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatagg 15680929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 28715303 - 28715416
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||| || |||||| |||||| | |  |||||||||| ||||| ||||| ||||||||||||||||| | ||||| | ||||||||    
T  28715303 taataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacac-gacacgtgttcgacaccgggacacgcctaattcgagaagtgt 28715401  T
Q  138 ccgtgcttcataggt 152  Q
     ||||||||||||||    
T  28715402 acgtgcttcataggt 28715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 7377991 - 7378098
Alignment:
Q  42 aatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgt 141  Q
    |||||||||||||  || ||||||||||||| |||| |||||||||| ||||| ||||    | ||||||||||||| ||||||||  ||||||||||||    
T  7377991 aatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacac-gacatgcatccgacaccgggacacggctaatctgagaagtgtccgt 7378089  T
Q  142 gcttcatag 150  Q
    |||||||||    
T  7378090 gcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 7265644 - 7265535
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| |||| |||||||||| |||| | | |||||| ||||||||| | ||| ||||||| || || ||    
T  7265644 taataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcggaca-caatacatgtccgacaccggaatatgcctaatccgaggagcgt 7265546  T
Q  138 ccgtgcttcat 148  Q
    |||||||||||    
T  7265545 ccgtgcttcat 7265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 12236688 - 12236780
Alignment:
Q  60 aattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||||||  ||| ||||| ||| | ||||||||||||||||| |||||||||| | |||| |  || ||||| ||||||||||||||    
T  12236688 aattcaatgtaatcgtatgtgtcgatgttaaacaccgacacatgttcggcaccgggacacgcctaacctgaggagtgttcgtgcttcataggt 12236780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 32978909 - 32978842
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttca 147  Q
    |||||||||| ||||| ||||||||| ||||||||||||| | ||||||| || |||||||||||||||    
T  32978909 tgtcggtgtcggacac-gacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 149
Target Start/End: Original strand, 33419181 - 33419292
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| ||| ||  | ||||||||||||| |||| ||| ||||||||||||| || | ||| | ||||| ||||||| ||||||| |||||| |    
T  33419181 taataatttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacaccaggacatgcctaatccaagaagtat 33419280  T
Q  138 ccgtgcttcata 149  Q
      ||||||||||    
T  33419281 ttgtgcttcata 33419292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 10339124 - 10339051
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtg 153  Q
    |||||||||| ||||| ||||||||| |||||| |||||| | ||||||  || |||||||||||||||||||||    
T  10339124 tgtcggtgtcggacac-gacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggtg 10339051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 9658854 - 9658998
Alignment:
Q  5 gacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgt 104  Q
    ||||| ||||| ||||||||||  ||  || | ||||||||| |||||||  || |||||| |||||| |||| ||||||||| |||||| ||||| |||    
T  9658854 gacacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacac-gacacgtgt 9658952  T
Q  105 tcgacaccgggacatggctaatccca-gaagtgtccgtgcttcata 149  Q
      |||||||| ||| | ||||| ||| | |||||||||||||||||    
T  9658953 ctgacaccggaacacgcctaattccaaggagtgtccgtgcttcata 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 18367896 - 18367968
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||||||||| |||||||||  ||||| |||||| | || |||| || ||||||||||||||||||||    
T  18367896 tgtcggtgtcagacac-gacacatgtctgacacggggacacgccttatccaaggagtgtccgtgcttcataggt 18367968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 28152107 - 28152217
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  |||||||||| ||||| ||||| ||| ||||||||||||| | ||||||| || |||||    
T  28152107 taataatttga-aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgggacaggcctaatccgaggagtgt 28152204  T
Q  138 ccgtgcttcatag 150  Q
     ||||||||||||    
T  28152205 tcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 34595142 - 34595253
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  |||||||||| ||||| ||||| |||  ||||||||||||   ||||||| || |||||    
T  34595142 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgt 34595240  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  34595241 ccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 12235572 - 12235462
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagt 135  Q
    |||||||||| ||||||||| || |||||| |||||| |||  ||||| |||| |||||||||   ||| || ||||||||||   ||||||| | ||||    
T  12235572 gataataattagagaaaatgacataattcagtgtaatcataggtgtcg-tgtccgacaccgacgtgtgtccggcaccgggacacccctaatccaaaaagt 12235474  T
Q  136 gtccgtgcttca 147  Q
    ||||||||||||    
T  12235473 gtccgtgcttca 12235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 9617442 - 9617492
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||||  || ||||||||||||| |||| ||||||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9617492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 30851605 - 30851664
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacac 94  Q
    |||| ||||||||| |||||||  |||||||||||||||| |||| |||||||||| |||||    
T  30851605 actgctaataatttaagaaaat--cacaattcaatgtaattatatgtgtcggtgtcggacac 30851664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 4877992 - 4878063
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||||||||| |||||| || ||| | ||||||| || ||||||||||||||||||||    
T  4877992 tgtcggtgtcggacac-gacacatgtccgacacagg-acacgcctaatccgaggagtgtccgtgcttcataggt 4878063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 9025489 - 9025448
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttca 147  Q
    ||||||||||||| | ||||||| ||||||||||||||||||    
T  9025489 cgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 9629392 - 9629441
Alignment:
Q  39 aataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    ||||||||||||||||  || ||||||||||||| |||| ||||||||||    
T  9629392 aataatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtc 9629441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 12627896 - 12627779
Alignment:
Q  9 caacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcga 108  Q
    |||||| |||||| |||| |||  || |||| |||||| |||||||  || | ||||||||||| |||| ||||| |||| |||||| ||||||||  ||    
T  12627896 caacacaaacactaacacgtcgacacggatactaatttaagaaaataacatatttcaatgtaatcatatatgtcgatgtctgacaccaacacatgtctga 12627797  T
Q  109 caccgggacatggctaat 126  Q
     || |||||||| |||||    
T  12627796 aactgggacatgcctaat 12627779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 150
Target Start/End: Complemental strand, 13360420 - 13360313
Alignment:
Q  41 taatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccg 140  Q
    ||||||||||||||  || |||||| |||||| |||| | ||||||||||||| | ||| |||| |||||| | |||| | ||||||| |  ||||||||    
T  13360420 taatttgagaaaatcacataattcagtgtaattatatgtttcggtgtcagaca-caaca-atgtccgacactgagacacgcctaatccgaagagtgtccg 13360323  T
Q  141 tgcttcatag 150  Q
    ||||||||||    
T  13360322 tgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 2140535 - 2140499
Alignment:
Q  35 tgataataatttgagaaaatgccacaattcaatgtaa 71  Q
    ||||||||||||||||||||| || ||||||||||||    
T  2140535 tgataataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9024225 - 9024177
Alignment:
Q  40 ataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||| || ||||||||||||| |||| |||| |||||    
T  9024225 ataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtc 9024177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 10157995 - 10158051
Alignment:
Q  41 taatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccga 97  Q
    ||||||||||||||| || ||||||||||||| | || |||||||  ||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggtaccagacaccga 10158051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 12627628 - 12627549
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggaca 118  Q
    ||||||| ||| |||||  || |||||| ||||||||||| ||||| |||| |||||| |||||||| |||||||| ||||    
T  12627628 taataatgtgaaaaaatcacataattcagtgtaataatatgtgtcgatgtcggacacc-acacatgtccgacaccgagaca 12627549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19040360 - 19040427
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttc 106  Q
    |||||||||||||||||  || |||||| |||||| |||| |||| ||||| |||| ||||||||||||    
T  19040360 taataatttgagaaaatcacataattcagtgtaattatatgtgtctgtgtcggaca-cgacacatgttc 19040427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 40993364 - 40993273
Alignment:
Q  60 aattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||| |||||| |||| |||||||||| ||||| ||||||||| ||||||||||||| | ||||||| || ||||||| ||||||||||||    
T  40993364 aattcagtgtaattatatgtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcataggt 40993273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 20691305 - 20691383
Alignment:
Q  16 aacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacac 94  Q
    ||||||||||| | |  ||||||||||||||||||||||| || |||||| |||||| |||| ||||||||||||||||    
T  20691305 aacactgacacgtagaaactgataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 20503474 - 20503584
Alignment:
Q  39 aataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtc 138  Q
    |||||||||| |||||| || |||||| |||||| | |  |||||||||  ||||| |||||||||  |||||||||||| | ||||||| || ||||||    
T  20503474 aataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacac-gacacatgtctgacaccgggacacgcctaatccgaggagtgtc 20503572  T
Q  139 cgtgcttcatag 150  Q
    ||||||||||||    
T  20503573 cgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 24205126 - 24204983
Alignment:
Q  4 ggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatg 103  Q
    |||||| ||||| ||||||||||  ||  || |||||||||||||||||||| || ||| || |||||| |||  |||| ||||| ||||| ||| | ||    
T  24205126 ggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtc-gtgtcggacactgacgcgtg 24205028  T
Q  104 ttcgacaccgggacatggctaatcccagaagtgtccgtgcttcat 148  Q
    | ||||||| ||||| | ||||| | || ||||||||||||||||    
T  24205027 tccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 27505315 - 27505370
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||| ||| ||||||||||||||| ||||||| || ||||||||||||||||||    
T  27505315 cgacacgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 29508514 - 29508573
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtga 154  Q
    ||||||| || ||||||||||||| | ||||||| ||||||||||||||||||| |||||    
T  29508514 cgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcattggtga 29508573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 8789599 - 8789489
Alignment:
Q  40 ataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccg-acacatgttcgacaccgggacatggctaatcccagaagtgtc 138  Q
    |||||||||||||||  || |||||  |||||| |||| |||||||||| |||||   ||||||||  ||||||| |||| | ||||||| || ||||||    
T  8789599 ataatttgagaaaatcacataattccgtgtaattatatgtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtc 8789500  T
Q  139 cgtgcttcata 149  Q
    |||||||||||    
T  8789499 cgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 40150624 - 40150567
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagaca 93  Q
    ||||||||||||||||||||  | ||||||||||||| |||| |||||||||| ||||    
T  40150624 gataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtctgaca 40150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 41961634 - 41961577
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||| ||| |||||| |||||| | ||||||| |||||||||||||||||||||||    
T  41961634 cgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcataggt 41961577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 45451556 - 45451640
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggaca 118  Q
    |||| |||||||||||||||||  || | |||| | ||||||||| |||||||||| |||| |||||||||| |||||||| ||||    
T  45451556 actgctaataatttgagaaaatcacatacttcagtataataatatgtgtcggtgtcggaca-cgacacatgtccgacaccgagaca 45451640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 48202321 - 48202248
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgaca 110  Q
    |||||| |||||||||||  || |||| |||||||| |||| |||| |||||| ||||| ||||||||||||||    
T  48202321 ataatagtttgagaaaatcacataatttaatgtaattatatgtgtctgtgtcaaacaccaacacatgttcgaca 48202248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 49651771 - 49651714
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||| | |||||||||||||   ||||||| |||||||||||||||||||||||    
T  49651771 cgacacatatccgacaccgggacacacctaatccgagaagtgtccgtgcttcataggt 49651714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 13807172 - 13807228
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtca 89  Q
    |||||||| |||||||||||||  || |||||||| ||||||||| |||||||||||    
T  13807172 actgataacaatttgagaaaatcacataattcaatataataatatgtgtcggtgtca 13807228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 55401083 - 55401194
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||| | |||||| | |  |||||||||| ||||| ||||| ||| |||||||| |||| | ||||||| || |||||    
T  55401083 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatccgaggagtgt 55401181  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  55401182 ccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 8842366 - 8842448
Alignment:
Q  67 tgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||| |||| |||||||||||||||| |||||||||| || |  | |||| | ||||||| || ||||||||||||||||||    
T  8842366 tgtaattatatatgtcggtgtcagacac-gacacatgttagatattgagacacgcctaatccgaggagtgtccgtgcttcatag 8842448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 25093505 - 25093582
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacac 111  Q
    |||| |||| ||||||||||||  ||||||||| |||||| |||| |||||||||| |||| | |||||||| ||||||    
T  25093505 actgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcggaca-caacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 32384380 - 32384442
Alignment:
Q  10 aacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||| ||||| |||||||||  ||||||||||| ||||||||||| ||| ||| ||||||||    
T  32384380 aacacaaacacggacacatcgacactgataataacttgagaaaatgacacgattaaatgtaat 32384442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 11251986 - 11252095
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| ||||||  ||| ||||||||||||||| | |||| ||| || || ||| ||| | ||||||| || |||||    
T  11251986 taataatttgagaaaatcacataattcagtgtaat--tatgtgtcggtgtcagaca-caacacgtgtccggcatcggaacacgcctaatccgaggagtgt 11252082  T
Q  138 ccgtgcttcatag 150  Q
    | |||||||||||    
T  11252083 ctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 14209173 - 14209245
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||||| ||| ||||| ||||| |   ||||||| |||||||||||||||||||||||    
T  14209173 tgtcggtgtcggacac-gacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcataggt 14209245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 27903686 - 27903758
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatagg 151  Q
    |||||||||| || |||||| | |||  ||||| ||  |||| ||||||| ||||||||||||||||||||||    
T  27903686 tgtcggtgtcggataccgacgcgtgtctgacactggatcatgcctaatccgagaagtgtccgtgcttcatagg 27903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 34185096 - 34185052
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||    
T  34185096 cgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 38078739 - 38078601
Alignment:
Q  11 acacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgaca 110  Q
    |||||||||||||||| |||  || | ||||||||||| |||||  || ||||||||||||| | |  |||||||||| |||| |||||||||||| |||    
T  38078739 acacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggaca-cgacacatgttcaaca 38078641  T
Q  111 ccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    || ||||| | ||||||| || ||| | ||||||||||||    
T  38078640 ccaggacacgcctaatccgaggagtattcgtgcttcatag 38078601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 2896206 - 2896059
Alignment:
Q  4 ggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatg 103  Q
    |||||||||||| ||||||||||  ||  || | |||||||||||||||||  || |||||| ||||   |||| ||||||||||||||| |||||  ||    
T  2896206 ggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtagctatatatgtcggtgtcagaca-cgacatgtg 2896108  T
Q  104 ttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    | ||| |||||||||   ||||||| |||||||||| || |||||||||    
T  2896107 tccgagaccgggacacacctaatccaagaagtgtccatgtttcataggt 2896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 153
Target Start/End: Complemental strand, 5898317 - 5898203
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||| ||| |||||  || |||||| |||||| ||||  ||||||||||||||| ||||| ||| | ||||||||||| | ||||||| || |||||    
T  5898317 taataatctgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcagacac-gacacgtgtccaacaccgggacacgtctaatccgaggagtgt 5898219  T
Q  138 ccgtgcttcataggtg 153  Q
    |||||||| |||||||    
T  5898218 ccgtgctttataggtg 5898203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 9828104 - 9828176
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||| ||||||||||| ||||| ||| ||||||||||||| | ||||||| || ||||||||||||||||||||    
T  9828104 tgtccgtgtcagacac-gacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggt 9828176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 11412821 - 11412709
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagt 135  Q
    ||||||||| |||||||||| || |||||||||| || |||  |||||||||  |||||| |||  ||| ||||||  ||||||| || |||| || |||    
T  11412821 gataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtgttggacaccaacatgtgtccgacactaggacatgccttatcctaggagt 11412722  T
Q  136 gtccgtgcttcat 148  Q
    |||||||||||||    
T  11412721 gtccgtgcttcat 11412709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 19637760 - 19637854
Alignment:
Q  22 gacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggac 117  Q
    |||||||||  || ||||||||||| |||||||| ||  |||||||||||| |||| |||||||||| |||| ||| |||| | ||||||||||||    
T  19637760 gacacatcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggaca-cgatacatatccgacaccgggac 19637854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 40258984 - 40258874
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  ||||||||||||||| |||||| ||| ||||||| ||||| | ||||||| || |||||    
T  40258984 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagaca-cgacacctgtccgacaccaggacacgcctaatccgaggagtgt 40258886  T
Q  138 ccgtgcttcata 149  Q
    || |||||||||    
T  40258885 ccatgcttcata 40258874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 17778617 - 17778670
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcat 148  Q
    |||||| ||| ||||||||||||||| ||||||| |||||||| ||||||||||    
T  17778617 cgacacgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 36878469 - 36878585
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacacc-----gggacatggctaatcccaga 132  Q
    |||||||||||||||||  || |||||| |||||| |||  |||||||||| ||||| || |||||| ||||||      |||||| | ||||||||||     
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtctgacac-gaaacatgtccgacacgacacggggacacgcctaatcccagg 36878567  T
Q  133 agtgtccgtgcttcatag 150  Q
    ||||||||||||||||||    
T  36878568 agtgtccgtgcttcatag 36878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 37598840 - 37598951
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| |||  |||||||||| ||||| ||||| ||| |||||  |||||| | ||||||| || |||||    
T  37598840 taataatttgaaaaaatcaca-aattcagtgtaattataagtgtcggtgtcggacac-gacacgtgtccgacaatgggacacgcctaatccgaggagtgt 37598937  T
Q  138 ccgtgcttcatagg 151  Q
    ||||||||||||||    
T  37598938 ccgtgcttcatagg 37598951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 18556452 - 18556385
Alignment:
Q  82 cggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||||| ||||||| | | |||||| |||||| | ||||||| |||||||||||||||||||||    
T  18556452 cggtgtcagac-ccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 22515938 - 22515827
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||| | |||||| | |  |||||||||| ||||| ||||||| | |||||||| |||| | ||||||| || |||||    
T  22515938 taataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac-gacacatatccgacaccgagacacgcctaatccgaggagtgt 22515840  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  22515839 ccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 29163410 - 29163323
Alignment:
Q  60 aattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcat 148  Q
    |||||||| |||| |||| |||||||||| ||||| ||||| ||   |||||||||||| ||||||||  |||||||| ||||||||||    
T  29163410 aattcaatttaattatatgtgtcggtgtcggacac-gacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 40747826 - 40747706
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtc-----ggtgtcagacaccgacacatgttcgacaccgggacatggctaatccca 130  Q
    |||||||||||||||||||| || ||||||||||||| |||  ||||     |||||| ||||||||  ||||| | |||| ||||||   ||||||| |    
T  40747826 gataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggacaccgatccatgtcccacacagggacacccctaatccga 40747727  T
Q  131 gaagtgtccgtgcttcatagg 151  Q
    | || ||||||||||||||||    
T  40747726 ggagcgtccgtgcttcatagg 40747706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 18337338 - 18337448
Alignment:
Q  39 aataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtc 138  Q
    |||||||||| |||||  || |||||| |||||| | |  |||||||||| |||||  |||| ||| |||||| |||||||| || |||| || ||||||    
T  18337338 aataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacaca-acacgtgtccgacactgggacatgcctgatccgaggagtgtc 18337436  T
Q  139 cgtgcttcatag 150  Q
    ||||||||||||    
T  18337437 cgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 32461463 - 32461393
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| ||||| ||||| |||  ||||| |||||| | ||||||| |||||||||||||||||||||    
T  32461463 tgtcggtgtcggacac-gacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 47989557 - 47989627
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| ||||| |||||||||  |||| ||||||| | ||||||| || ||||||||||||||||||    
T  47989557 tgtcggtgtcggacac-gacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 351089 - 351023
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgctt 145  Q
    ||||| ||| |||||||||| ||||||| ||||||||||| | ||||||| || |||||||| ||||    
T  351089 tgtcgctgttagacaccgacgcatgttcaacaccgggacacgcctaatccaaggagtgtccgagctt 351023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 22881611 - 22881565
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||||    
T  22881611 cgacaccgggacacgtctaatccgaggagtgtccgtgcttcataggt 22881565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 40917824 - 40917881
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||| ||| ||||||||||||| | ||||||| || | ||||||||||||||||||    
T  40917824 cgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcataggt 40917881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 1815306 - 1815377
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatagg 151  Q
    |||||||||| ||||| ||||||||| ||||||||||||| | ||||||  || |||| ||||| ||||||||    
T  1815306 tgtcggtgtccgacac-gacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatagg 1815377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 11571591 - 11571627
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaat 72  Q
    |||||||||||||||||||| || |||||||||||||    
T  11571591 gataataatttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 20157435 - 20157351
Alignment:
Q  4 ggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||| |||||  |||||||||||||  || | ||||||| |||||||||  || |||||| |||||| |||| ||||||||||    
T  20157435 ggacacgacacgggcactgacacatcgacaccgctaataatgtgagaaaatcacataattcagtgtaatcatatgtgtcggtgtc 20157351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 25452204 - 25452143
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccg 96  Q
    |||| |||||||||||||||||  || |||||| ||||||  ||| ||||||||||||||||||    
T  25452204 actgctaataatttgagaaaatctcataattcagtgtaat--tatgtgtcggtgtcagacaccg 25452143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 31694709 - 31694638
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatagg 151  Q
    |||||||||| |||||  |||||| ||||||||||| ||| | ||||||  || |||||||||||||||||||    
T  31694709 tgtcggtgtcggacaca-acacatattcgacaccggaacacgcctaatctgaggagtgtccgtgcttcatagg 31694638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 30502439 - 30502330
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  |  |||||| |||||| |||| |||||||||| |||| |||||||||| |||||| |||||||| ||||||| || | |||    
T  30502439 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggaca-cgacacatgtccgacactgggacatgcctaatccaaggattgt 30502341  T
Q  138 ccgtgcttcat 148  Q
     ||||||||||    
T  30502340 tcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 30542782 - 30542673
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  |  |||||| |||||| |||| |||||||||| |||| |||||||||| |||||| |||||||| ||||||| || | |||    
T  30542782 taataatttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggaca-cgacacatgtccgacactgggacatgcctaatccaaggattgt 30542684  T
Q  138 ccgtgcttcat 148  Q
     ||||||||||    
T  30542683 tcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 43564930 - 43565002
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||||  ||| |||| |||||||| | ||||||| |||||||||||||||||||||||    
T  43564930 tgtcggtgtcggacac-gacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcataggt 43565002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 17925224 - 17925173
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||| |||||||  || |||||||||||||||||| ||||||||||    
T  17925224 ataataatttaagaaaatcacataattcaatgtaataatatgtgtcggtgtc 17925173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 39424648 - 39424711
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacac 100  Q
    ||||||||||||||||||| ||  |||||||||| | | |||||||  ||||||||||||||||    
T  39424648 ataataatttgagaaaatgacatgattcaatgtattcacatctgtcaatgtcagacaccgacac 39424711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 43208327 - 43208276
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgt 87  Q
    |||| ||||||||||||||| || ||||||||||||| ||||||||| ||||    
T  43208327 gatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgt 43208276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 3966511 - 3966561
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||||  ||||||||| |||||| |||| ||||||||||    
T  3966511 taataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtc 3966561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 21191107 - 21190998
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  |||||||||| |||||  |||| ||| |||| |||||||| | ||||||| || |||||    
T  21191107 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacaca-acacgtgtccgactccgggacacgcctaatccgaggagtgt 21191009  T
Q  138 ccgtgcttcat 148  Q
    |||||||||||    
T  21191008 ccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 28588725 - 28588612
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| |||  |||||||||| |||| |||||||| |  |||||| ||||| |  |||||| |  |||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggaca-cgacacatatctgacaccaggacacgcttaatccgaagagtgt 28588627  T
Q  138 ccgtgcttcataggt 152  Q
    || ||||||||||||    
T  28588626 ccatgcttcataggt 28588612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 41600871 - 41600945
Alignment:
Q  3 tggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatat 77  Q
    |||| |||||||||||||| |||| ||   | ||||||||||||||||||||  ||||||||||| |||| ||||    
T  41600871 tggatacaacacgaacactaacacgtcaacattgataataatttgagaaaattacacaattcaatataatcatat 41600945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 11596521 - 11596472
Alignment:
Q  23 acacatcggtactgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    |||| ||| ||| |||||||||||||||||||| || |||||||||||||    
T  11596521 acacgtcgataccgataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 23012459 - 23012379
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacat 119  Q
    |||||||||||||||||   | |||| |||||||| |||| |||||||||  |||| ||||||||||  |||||||||||||    
T  23012459 taataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggaca-cgacacatgtctgacaccgggacat 23012379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 21576796 - 21576685
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| | |  ||||| |||| ||||| ||||| |||  ||||| |||||| | ||||||| || |||||    
T  21576796 taataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcggacac-gacacgtgtctgacactgggacacgcctaatccgaggagtgt 21576698  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  21576697 ccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 28296334 - 28296386
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    |||||||||||||||||||| || ||||||||||| | |||| ||| ||||||    
T  28296334 gataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtc 28296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 8423769 - 8423658
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| |||  |||||||||| ||||| ||||  ||| ||||||||||||| | ||||||  ||||||||    
T  8423769 taataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacac-gacagctgtccgacaccgggacacgcctaatcggagaagtgt 8423671  T
Q  138 ccgtgcttcatag 150  Q
    |||||| ||||||    
T  8423670 ccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 18513294 - 18513173
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtc-----ggtgtcagacaccgacacatgttcgacaccgggacatggctaatccca 130  Q
    |||||||||||||||||||| || ||||||||||||| |||| ||||      ||||| |||||||||   ||| ||||||| ||||| | ||||||  |    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctga 18513195  T
Q  131 gaagtgtccgtgcttcataggt 152  Q
    | ||||||||||||||||||||    
T  18513194 ggagtgtccgtgcttcataggt 18513173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 23293037 - 23292926
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| | |||| | |  |||||||||| ||||| ||||| ||| ||||||||||||| | ||||||| || |||||    
T  23293037 taataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgt 23292939  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  23292938 ccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 24343513 - 24343632
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataata----tc-tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatccca 130  Q
    |||||||||||||||||||  || |||||| |||||| |||    || |||||||||| ||||||||| | ||| ||||||||||||| | ||| ||  |    
T  24343513 gataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctattctga 24343612  T
Q  131 gaagtgtccgtgcttcatag 150  Q
    | ||||||||||||||||||    
T  24343613 ggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 30982877 - 30982808
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcata 149  Q
    |||||||||||||||| ||||| ||| ||||||||||||| | ||||||| |  |||||||||||||||||    
T  30982877 tgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 33950111 - 33950201
Alignment:
Q  5 gacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacacc 95  Q
    |||| ||||||||||||||||| ||    | | |||||||||||||||||  || |||| |||||||| |||| |||||||||||||||||    
T  33950111 gacataacacgaacactgacacttcaacgccgctaataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 22234889 - 22234817
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||||| ||| ||||||| |||||  |||||||| |||||||| ||||||||||||||    
T  22234889 tgtcggtgtctgacac-gacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcataggt 22234817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 24613700 - 24613628
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||||||||| ||||| |||  |||||| ||||| | ||||||| || ||||||||||||||||||||    
T  24613700 tgtcggtgtcagacac-gacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttcataggt 24613628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 12077809 - 12077869
Alignment:
Q  11 acacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaa 71  Q
    |||||||||||||||| ||  ||||| |||||||||||||||||  || ||||||||||||    
T  12077809 acacgaacactgacacgtcaatactgttaataatttgagaaaatcacataattcaatgtaa 12077869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 35158036 - 35157925
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||  |||||  || |||| | |||||| |||  |||||||||| ||||| ||||||||| | ||||||| ||| |  |||||| ||||||||    
T  35158036 taataatttggaaaaatcacataatttagtgtaattataagtgtcggtgtctgacac-gacacatgtccaacaccggaacacgcttaatccgagaagtgt 35157938  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  35157937 ccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 37203327 - 37203371
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||    
T  37203327 cgacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 46715524 - 46715416
Alignment:
Q  39 aataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtc 138  Q
    |||||||||||| |||  || ||||||||||| | |||| |||| ||||| ||||| | | | ||| ||||||||| ||||| ||||||| || |||||     
T  46715524 aataatttgagacaatcacataattcaatgtagttatatttgtctgtgtcggacactgccgcgtgtccgacaccggcacatgtctaatccgaggagtgtt 46715425  T
Q  139 cgtgcttca 147  Q
    |||||||||    
T  46715424 cgtgcttca 46715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 56049864 - 56049939
Alignment:
Q  17 acactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagaca 93  Q
    |||| |||||||||  || ||||||||||||||||| || || | ||||||||||| |||| |||||||||||||||    
T  56049864 acacggacacatcgacaccgataataatttgagaaa-tgacatagttcaatgtaatcatatgtgtcggtgtcagaca 56049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 715600 - 715545
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| |||||| |||||| | ||||||| || ||||||||||||||||||    
T  715600 cgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 752926 - 752871
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| |||||| |||||| | ||||||| || ||||||||||||||||||    
T  752926 cgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 5654647 - 5654608
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  5654647 actgataataatttgagaaaatgacataattcaatgtaat 5654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 43300024 - 43299973
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgt 87  Q
    |||||||||||||||||||  || ||||||||||||| ||||||| ||||||    
T  43300024 gataataatttgagaaaattacataattcaatgtaatcatatctgccggtgt 43299973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 48139267 - 48139345
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacacc 112  Q
    |||| ||||||||||||| |||  || |||| |||||||| |||| ||| | ||||||||| ||||||||||||||||||    
T  48139267 actgttaataatttgagataatctcataatttaatgtaattatatgtgttgatgtcagaca-cgacacatgttcgacacc 48139345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 7214573 - 7214488
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcc 128  Q
    |||||||||||||||||  || |||| |||||||| ||||  ||||||||||     |||||||||| ||||||||||| ||| |||||||    
T  7214573 taataatttgagaaaatcacataatttaatgtaattatatgcgtcggtgtca-----cgacacatgtccgacaccgggaaatgcctaatcc 7214488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 34515958 - 34515892
Alignment:
Q  5 gacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaa 71  Q
    |||||||||||||||||||||| |||  || ||||||||||  |||||||| || |||||| |||||    
T  34515958 gacacaacacgaacactgacacgtcgacacggataataattcaagaaaatgacataattcagtgtaa 34515892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 10546153 - 10546190
Alignment:
Q  35 tgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||||||||||||||||||| || |||||||||||||    
T  10546153 tgataataatttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 14465070 - 14465006
Alignment:
Q  84 gtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcata 149  Q
    ||||||||||| ||||| |||||||||| |||||| | ||||||  || |||||||||||||||||    
T  14465070 gtgtcagacac-gacacgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 17876219 - 17876288
Alignment:
Q  84 gtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggtg 153  Q
    ||||||||||||||| | ||| ||||||| |||||   ||||||| || |||||| ||||||||||||||    
T  17876219 gtgtcagacaccgacgcttgtccgacaccaggacacacctaatccaaggagtgtctgtgcttcataggtg 17876288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 150
Target Start/End: Complemental strand, 21345585 - 21345473
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtg 136  Q
    |||||||||||| |||||  || || |||||||||| || | ||||||||||||||| ||| |||| | | ||||||| ||||| ||||||| || |||     
T  21345585 ataataatttgaaaaaataacataactcaatgtaatcatttatgtcggtgtcagaca-cgatacatatccaacaccggtacatgcctaatccgaggagta 21345487  T
Q  137 tccgtgcttcatag 150  Q
    |  |||||||||||    
T  21345486 tgtgtgcttcatag 21345473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 53381601 - 53381528
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||| | | | |||||||||||||   ||||||| || ||||||||||||||||||||    
T  53381601 tgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggt 53381528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 5225662 - 5225614
Alignment:
Q  40 ataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtc 88  Q
    ||||||||||| |||| || ||||||||| |||||||| ||||||||||    
T  5225662 ataatttgagataatgacataattcaatgcaataatatgtgtcggtgtc 5225614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 14465347 - 14465299
Alignment:
Q  36 gataataatttgagaaaatgccacaattcaatgtaataatatctgtcgg 84  Q
    |||||||||||||||||||| || |||||||| |||| |||| ||||||    
T  14465347 gataataatttgagaaaatgacataattcaatttaatcatatgtgtcgg 14465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 16886682 - 16886726
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||| ||| |||||||| ||||||||||||||||| ||||    
T  16886682 cgacaccggaacacggctaatctcagaagtgtccgtgcttgatag 16886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 40179687 - 40179576
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||| ||||| |||||  || |||||| |||||| ||||  ||||||||| ||||| |||||||||||||||||  |||| | ||||||| |||| | |    
T  40179687 taatagtttgaaaaaatcacataattcagtgtaattatatgcgtcggtgtcggacac-gacacatgttcgacaccatgacacgcctaatccgagaattat 40179589  T
Q  138 ccgtgcttcatag 150  Q
     ||||||| ||||    
T  40179588 tcgtgcttgatag 40179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 27213601 - 27213648
Alignment:
Q  107 gacaccgggacatggctaatcccagaagtgtccgtgcttcataggtga 154  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  27213601 gacaccgggacacggctaatccgagaagtgtccgtgcttcataggtga 27213648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 150
Target Start/End: Complemental strand, 33405470 - 33405324
Alignment:
Q  3 tggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacat 102  Q
    ||||||| ||| | |||||||||||  ||  ||| ||||||||||||||||   || |||| | |||||| |||| |||||||||| ||||| |||||||    
T  33405470 tggacacgacatggacactgacacactggccctgttaataatttgagaaaaacacataatttagtgtaattatatgtgtcggtgtcggacac-gacacat 33405372  T
Q  103 gttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||  |||||| ||||| ||||||||| |  |||||||||||| |||||    
T  33405371 gtctgacacctggacacggctaatccaatgagtgtccgtgctccatag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 150
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtg 136  Q
    |||||||||||||||||||  | |||| | |||||| |||  ||||| |||| ||||||||| | ||| |||||| |||||| | ||||||| |||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcg-tgtcggacaccgacgcgtgtccgacac-gggacacgcctaatccgagaagtg 39820533  T
Q  137 tccgtgcttcatag 150  Q
    ||||||||||||||    
T  39820534 tccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 14134707 - 14134818
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| |||| ||||||||||| ||| |||||| ||| || |||| ||||| | ||||| | || |||||    
T  14134707 taataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtcaaaca-cgacacgtgtccgtcaccaggacacgcctaattcgaggagtgt 14134805  T
Q  138 ccgtgcttcatag 150  Q
    ||||| |||||||    
T  14134806 ccgtgtttcatag 14134818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 44462227 - 44462157
Alignment:
Q  57 cacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcc 128  Q
    ||||||||||| |||| |||| ||||||||||||||| ||| |||||| ||||||||||||| | |||||||    
T  44462227 cacaattcaatttaatcatatgtgtcggtgtcagaca-cgatacatgtccgacaccgggacacgtctaatcc 44462157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 44469760 - 44469690
Alignment:
Q  57 cacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcc 128  Q
    ||||||||||| |||| |||| ||||||||||||||| ||| |||||| ||||||||||||| | |||||||    
T  44469760 cacaattcaatttaatcatatgtgtcggtgtcagaca-cgatacatgtccgacaccgggacacgtctaatcc 44469690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 3025559 - 3025668
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  || |||||| |||||| |||  |||| ||||| ||||| ||||| |||  ||||| | |||| ||||||||| || |||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgtcagtgtcggacac-gacacgtgtctgacactgtgacacggctaatccgaggagtgt 3025657  T
Q  138 ccgtgcttcat 148  Q
    |||||||||||    
T  3025658 ccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 12985399 - 12985456
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacac 94  Q
    ||||||||||||||||||  || ||||||||||||| |||| |||||||||| |||||    
T  12985399 ataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacac 12985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 12606885 - 12606825
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagaca 93  Q
    |||| |||||||||||||||||   | ||||||||||||| |||| |||||||||||||||    
T  12606885 actgctaataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 15816102 - 15816058
Alignment:
Q  106 cgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||||||||| | ||||||| |||||||||||||||||||||    
T  15816102 cgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 14513179 - 14513108
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||||||||||||| ||||| ||||||||| |||   ||||||| |||| |||| ||| |||||||    
T  14513179 tgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatccaagaattgtctgtgattcatag 14513108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 22652036 - 22652106
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| ||||| ||||  ||| ||||||||||||| | ||||||| || ||||||||||||||||||    
T  22652036 tgtcggtgtcggacac-gacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 29447504 - 29447574
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||||||||| ||||  ||| ||||||||||||| | ||||||  || ||||||||||||||||||    
T  29447504 tgtcggtgtcagacac-gacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatag 29447574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 926839 - 926730
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    |||||||||||||||||  ||   |||| |||||| |||  |||||||||| ||| | ||||| ||| |||||||||||||||  | |||| || |||||    
T  926839 taataatttgagaaaatctcattgttcagtgtaattataagtgtcggtgtcggacgc-gacacgtgtccgacaccgggacatgctttatccgaggagtgt 926741  T
Q  138 ccgtgcttcat 148  Q
    |||||||||||    
T  926740 ccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 7616904 - 7616866
Alignment:
Q  34 ctgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  7616904 ctgatgataatttgagaaaatgacacaattcaatgtaat 7616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 12559157 - 12559044
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtca-----gacaccgacacatgttcgacaccgggacatggctaatcccaga 132  Q
    ||||||||||||||||||  | |||||| |||||| |||| | | |||||||     ||||||||||| ||| ||||| |||||||   ||||||||||     
T  12559157 taataatttgagaaaatgatataattcagtgtaatcatatgtattggtgtcatctcggacaccgacacgtgtccgacaacgggacacatctaatcccagg 12559058  T
Q  133 agtgtccgtgcttc 146  Q
    |||||| |||||||    
T  12559057 agtgtctgtgcttc 12559044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 29510303 - 29510231
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| ||||| ||| | ||| |||||||||||||   ||||||| || ||||||||||||||||||||    
T  29510303 tgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcataggt 29510231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 31236633 - 31236580
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtg 86  Q
    |||| |||||||||||||||||  || ||||||||||||| |||| ||||||||    
T  31236633 actgctaataatttgagaaaatcacataattcaatgtaattatatgtgtcggtg 31236580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 3508056 - 3508108
Alignment:
Q  34 ctgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtg 86  Q
    |||||||||||||||||||||  || ||||||||||||| |||| ||| ||||    
T  3508056 ctgataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 4786389 - 4786278
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||| |||||||  || |||||| |||||| |||| |||||||||| || || ||||  ||||||| | || ||||||||| || | |  |||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcggatac-gacatgtgttcgataacgagacatggcttattcaaagagtgt 4786291  T
Q  138 ccgtgcttcatag 150  Q
    |||||||||||||    
T  4786290 ccgtgcttcatag 4786278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 28819194 - 28819246
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggt 85  Q
    ||||||||||||||||||||||| || || |||||| ||| |||| |||||||    
T  28819194 actgataataatttgagaaaatggcataactcaatgcaatcatatgtgtcggt 28819246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 34201098 - 34201058
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatat 77  Q
    ||||||||||||||||||| || ||||||||||||| ||||    
T  34201098 ataataatttgagaaaatgacataattcaatgtaattatat 34201058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 241669 - 241724
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||| ||| ||||||||||||| | ||||||| |||||||||||||||||||||    
T  241669 cgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 70286 - 70394
Alignment:
Q  38 taataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgt 137  Q
    ||||||||||| |||||  || |||||| |||||| |||  |||||||||| |||| |||||| ||| ||||||| ||||||| ||||||| |  |||||    
T  70286 taataatttgaaaaaataacataattcagtgtaattataagtgtcggtgtcggaca-cgacacgtgtccgacaccaggacatgcctaatccgatgagtgt 70384  T
Q  138 ccgtgcttca 147  Q
     |||||||||    
T  70385 tcgtgcttca 70394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 518 - 403
Alignment:
Q  33 actgataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccaga 132  Q
    |||| ||||||||||| |||||  || |||||| |||||| | |  |||||||||| ||||| ||| | ||| |||||||||||||   ||||||| ||     
T  518 actgctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgagg 420  T
Q  133 agtgtccgtgcttcata 149  Q
    |||||||||||||||||    
T  419 agtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 4876 - 4821
Alignment:
Q  95 cgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    |||||||||| |||||| |||||| | ||||||| || ||||||||||||||||||    
T  4876 cgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 7685 - 7728
Alignment:
Q  25 acatcggtactgataataatttgagaaaatgccacaattcaatg 68  Q
    |||| |||||||||||||||||||||||||| || |||||||||    
T  7685 acattggtactgataataatttgagaaaatgacataattcaatg 7728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 2988 - 3058
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcatag 150  Q
    ||||||| |||||||| ||||| ||||||||||||| ||| | ||||||| || |||||||||||| |||||    
T  2988 tgtcggtatcagacac-gacacgtgttcgacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 71785 - 71857
Alignment:
Q  79 tgtcggtgtcagacaccgacacatgttcgacaccgggacatggctaatcccagaagtgtccgtgcttcataggt 152  Q
    |||||||||| |||||  |||| ||| ||||||||||||| | ||||||| || |||||| |||||||||||||    
T  71785 tgtcggtgtcggacaca-acacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcataggt 71857  T

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Target: scaffold0598 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 8131 - 8071
Alignment:
Q  11 acacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaa 71  Q
    ||||| |||| ||||| ||| ||| |||||||||||||||||||| || |||||| |||||    
T  8131 acacggacaccgacacgtcgatacggataataatttgagaaaatgacataattcagtgtaa 8071  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 240073 - 240021
Alignment:
Q  37 ataataatttgagaaaatgccacaattcaatgtaataatatctgtcggtgtca 89  Q
    ||||||||||||||||||   | ||||||||||||| |||| |||||||||||    
T  240073 ataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtca 240021  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 225353 - 225285
Alignment:
Q  4 ggacacaacacgaacactgacacatcggtactgataataatttgagaaaatgccacaattcaatgtaat 72  Q
    |||||| ||||| ||||||||||  ||  || |||||||||||||||||||| || ||| |||||||||    
T  225353 ggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacataatacaatgtaat 225285  T

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