View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_40 (Length: 242)
Name: NF14231_low_40
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 10720836 - 10720659
Alignment:
| Q |
51 |
tttgacatctgattacctccggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
150 |
Q |
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| T |
10720836 |
tttgatatctgattacctctggaacctatttagttttattataaatttcatacaatcaagtgtttaatcaactattgatggaaaacatgaatttagtcaa |
10720737 |
T |
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| Q |
151 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatttattacttacactgagaataat |
228 |
Q |
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| T |
10720736 |
cctagttttagaatcataaaaaagttgtagaatcgtatttagcttcattatctatatattacttacactgataataat |
10720659 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 10720967 - 10720936
Alignment:
| Q |
18 |
aggttctacgcctcttactgtgttctccttgc |
49 |
Q |
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| T |
10720967 |
aggttctacgcctcttactgtgttctccttgc |
10720936 |
T |
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