View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_low_42 (Length: 229)
Name: NF14231_low_42
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31896787 - 31896995
Alignment:
| Q |
1 |
ataattgaagtaaacttctattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttcaccctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31896787 |
ataattgaagtaaacttctattaaccataccactatgaggtgatcttctttattgcaaagagacgaaacttccttcagaaactctgggttcttcaccctc |
31896886 |
T |
|
| Q |
101 |
cctgttttaaaaaatcacatcattttcattctaacaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaatcaacgcctaatttt |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31896887 |
cctgtttt-aaaaatcacatgattttcattctaagaattgaatttacaaaccttcactaaataaagaatacaaaaaatgtttcaatgaacgcctaatttt |
31896985 |
T |
|
| Q |
201 |
ccctacacat |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
31896986 |
ccctacacat |
31896995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University