View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14231_low_6 (Length: 603)
Name: NF14231_low_6
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 21 - 595
Target Start/End: Original strand, 36684346 - 36684920
Alignment:
| Q |
21 |
gtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagattt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684346 |
gtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagattt |
36684445 |
T |
|
| Q |
121 |
ccctggtacatcattcccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaagtca |
220 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684446 |
ccctgatacatcattcccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaagtca |
36684545 |
T |
|
| Q |
221 |
atcttcccaacaaaacagagatctgtgaattccaaccataacaaattaagttatatatgtcaatcatttctatggattgtaagcaatacaaatatgctat |
320 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684546 |
atcttcccaacaaaatagagatctgtggattccaaccataacaaattaagttatatatgtcaatcatttctatggattgtaagcaatacaaatatgctat |
36684645 |
T |
|
| Q |
321 |
ttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggac |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684646 |
ttagatagagtcaacaaggtaatgagatgaagggtaacacttttttatacaacccaaatcctttaccacaatttcattgggaagctagatggctttggac |
36684745 |
T |
|
| Q |
421 |
tgttcgattaagagagaaattttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgt |
520 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36684746 |
tgttcgattaagagagaaaatttttaagattatgagagatcctctataatctaacggggtcttctgcatcgtaaagccaaatgtagagaatttaatttgt |
36684845 |
T |
|
| Q |
521 |
gttttatagacttttttaaatcttcttttaatatcgatctaaaccatcacggctcattaagttagtccctttgct |
595 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36684846 |
gttttatagacttttttaaatcttcttttaatatcgatctaaactatcacggctcattaagttagtccctttgct |
36684920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 36676673 - 36676868
Alignment:
| Q |
21 |
gtacctactcataatagttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagattt |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||| | | || ||| ||||||||||||| |||||||| |||||||| || ||| | |
|
|
| T |
36676673 |
gtacctactcataatcgttgtttctaaaaggatctgccttttaaacaaatgagagtcgaatagtctcttaacagctagtaattgaccattaggcagaaat |
36676772 |
T |
|
| Q |
121 |
ccctggtacatcattcccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaa |
216 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||| || |||||||| ||||||||||||||| |
|
|
| T |
36676773 |
ccttggtacatcattcccatctttcctaccccaatggcattgtccacagcaaaacaatcggttgcgtcacgcagttcttccaaccatattgttgaa |
36676868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 36673934 - 36674117
Alignment:
| Q |
37 |
gttgtttctaaaaggaactgcctttcaaaaagacgatagttagatagtctcttaacggctagtaactgaccatttggtagatttccctggtacatcattc |
136 |
Q |
| |
|
|||||||| |||||||||||||||| ||| || ||| ||| | ||| |||||||| || |||||||||||||| || ||| ||| ||||||||||||| |
|
|
| T |
36673934 |
gttgtttccaaaaggaactgccttttaaatagccgagagtcaaatattctcttaatagccagtaactgaccattaggaagaaatccttggtacatcattc |
36674033 |
T |
|
| Q |
137 |
ccatctttcccaccccaatggcgttgtctatagcaaaacagtcggttgtgtcccggagttcttctaaccatattgttgaagtca |
220 |
Q |
| |
|
|||||||||| ||||||||||| ||||| | ||| ||||| || |||| ||| | ||||| || |||||||||||| |||||| |
|
|
| T |
36674034 |
ccatctttcctaccccaatggcattgtcgacagcgaaacaatcagttgcgtcacacagttcatccaaccatattgttaaagtca |
36674117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University