View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14231_low_9 (Length: 567)
Name: NF14231_low_9
Description: NF14231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14231_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 8446401 - 8446952
Alignment:
| Q |
1 |
taacaatttagcatcctagatcactcgaatcaaaatgttcatcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaagtgaaaaatatta |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8446401 |
taacaatttagcatcctaaatcactcgaatcaaaatgttcatcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaattgaaaaatatta |
8446500 |
T |
|
| Q |
101 |
taaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaa |
200 |
Q |
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| T |
8446501 |
taaaatgcatagaaagcatagtactggtcgttattaatctgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttgctccggtctgaaa |
8446600 |
T |
|
| Q |
201 |
aaatctcgcattcaagcattagggacatggctggactgtttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatca |
300 |
Q |
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| T |
8446601 |
aaatctcgcattcaagcattagggacatggttggactgtttggtctagaatatcaaagagctaccaatgttccaaatgtgtgaatgtgattaatgaatca |
8446700 |
T |
|
| Q |
301 |
aggttttgggtacaaatcgatgacctttttccacgactcacgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446701 |
aggttttgggtacaaatcgatgacctttttccacgactcacgtgtggatatttccgtccaccaccttgacacattgtttcttgacgaagaagtaaacaaa |
8446800 |
T |
|
| Q |
401 |
tcagcggtgtcggcatcagcagcagccaccaagtagtgaatattgggaagatgtgaaaggtcggcaagtgtgaactcatcaccagccaagtagcgagttt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8446801 |
tcagcggtgtcggcatcagcagcagccaccaagtagtgaatattgggaagatgtgaaaggtcggcaagtgtgaattcatcaccagccaagtagcgagttt |
8446900 |
T |
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| Q |
501 |
ccccaagcctcttatcgtacacatcaagcactttcttgagcttttctttact |
552 |
Q |
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| T |
8446901 |
ccccaagcctcttatcgtacacatcaagcactttcttgagcttttctttact |
8446952 |
T |
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