View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14232_high_11 (Length: 287)

Name: NF14232_high_11
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14232_high_11
NF14232_high_11
[»] chr5 (15 HSPs)
chr5 (10-272)||(30713301-30713563)
chr5 (10-272)||(30435784-30436046)
chr5 (26-272)||(29853295-29853541)
chr5 (23-272)||(30400055-30400304)
chr5 (22-272)||(30338398-30338648)
chr5 (14-272)||(30483376-30483634)
chr5 (25-272)||(30206505-30206752)
chr5 (25-272)||(30677044-30677291)
chr5 (23-272)||(30060350-30060599)
chr5 (25-272)||(30242248-30242495)
chr5 (101-272)||(29872233-29872404)
chr5 (23-272)||(30749624-30749873)
chr5 (20-271)||(30331008-30331259)
chr5 (25-162)||(17418149-17418286)
chr5 (136-214)||(17983001-17983079)
[»] chr7 (1 HSPs)
chr7 (10-272)||(26707303-26707565)
[»] chr4 (2 HSPs)
chr4 (25-272)||(20296458-20296705)
chr4 (172-272)||(52352088-52352188)
[»] chr1 (1 HSPs)
chr1 (107-272)||(7099486-7099651)
[»] chr3 (1 HSPs)
chr3 (31-70)||(25293947-25293986)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 30713563 - 30713301
Alignment:
Q  10 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30713563 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaatttttcagagtgaaaacttatgtggtgt 30713464  T
Q  110 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30713463 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaagatcatgcattttaa 30713364  T
Q  210 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30713363 aagaaatgtttccagaatattcatccatcttgcaatcttggaagaatgatttttggtacaatt 30713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 30435784 - 30436046
Alignment:
Q  10 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30435784 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagttaaaacttatgtggtgt 30435883  T
Q  110 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || |    
T  30435884 gtgttttttgtcaaattagtcatgtttgcattctccaaatacatacattctttccccgttactgattgagcgagatcatggacaagatcatgcatcttga 30435983  T
Q  210 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  30435984 aagaaatgtctccaaaatattcatccatcttgctatcttgaaagaatgatttttggtacaatt 30436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 26 - 272
Target Start/End: Original strand, 29853295 - 29853541
Alignment:
Q  26 aacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaat 125  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||     
T  29853295 aacaatgttcgcaaggattcaacttttttaaaggcaccctcatcgaatgataacaaattatcggagttaaaacttatgtggtgtgtgctttttgtcaaac 29853394  T
Q  126 tagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccaga 225  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| || ||| || ||| ||||||    
T  29853395 tagtcatgtttgcattctccaaatacacacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaaaaatgtctccaga 29853494  T
Q  226 atattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
     |||||||||||||||  ||||||||||||||| |||||||||||||    
T  29853495 gtattcatccatcttgatatcttgaaagaatgacttttggtacaatt 29853541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 30400055 - 30400304
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 122  Q
    |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||    
T  30400055 tcaaaccatgttcgcaaggattcaacttttctgaaggcaccctcatcgaatgataacaaattatcagagttaaaacttatgtggtgtgtgctttttgaca 30400154  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 222  Q
    || ||||||||||||||||||||||||| | |||||||| |||| ||||||| | ||||||||||||||||| ||||||||| || || ||| |||| ||    
T  30400155 aactagtcatgtttgcattctccaaatatatacattcttgccccattactgacttagcgagatcatggacaagatcatgcatcttgaatgaaatgttgcc 30400254  T
Q  223 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    |||| |||||||||| ||    ||||||||||||||||||||||||||||    
T  30400255 agaaaattcatccatttttttgtcttgaaagaatgatttttggtacaatt 30400304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 30338648 - 30338398
Alignment:
Q  22 gtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtc 121  Q
    ||||||||| ||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  |||||||||||| |||||| |    
T  30338648 gtcaaacaaagttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaagttgttgctgtcaaaaccaatgtggtgtgtgctttttgac 30338549  T
Q  122 aaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttc 221  Q
    ||||||||| |||||  |||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||| ||    
T  30338548 aaattagtcgtgtttttattctccaaacacatacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctc 30338449  T
Q  222 cagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  30338448 cagaatattcatccatcttgctatcttgaaagaacgattttttgtacaatt 30338398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 30483376 - 30483634
Alignment:
Q  14 ttctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgt 113  Q
    |||| |||||||||||||||||| |||||||||||||||||||| |||   |||||||| ||||| || || |    || |||||  ||||||||||||     
T  30483376 ttcttcaagtcaaacaatgttcgcaaggattcaacttttttgaaagcattttcatcgaaggataaaaatttcttgctgttaaaaccaatgtggtgtgtgc 30483475  T
Q  114 tttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaaga 213  Q
    |||||| |||||||||| |||||  |||||||||| ||  |||||||| |||| ||||||||||||||||||||||||||| ||||||||| || |||||    
T  30483476 tttttgacaaattagtcgtgtttttattctccaaacacgtacattcttgccccattactgattgagcgagatcatggacaagatcatgcatcttgaaaga 30483575  T
Q  214 actgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    | ||| ||||||||||||||||||||||| |||||||||||| ||||||  ||||||||    
T  30483576 aatgtctccagaatattcatccatcttgctatcttgaaagaacgattttctgtacaatt 30483634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 30206505 - 30206752
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 124  Q
    |||||||||||  ||||||||||||||  ||||||||||||| |||||||||||||  |  ||| ||||||||||||||||||||||| |||||| ||||    
T  30206505 aaacaatgttctcaaggattcaactttcctgaaggcaccctcgtcgaatgataacacgtcatcatagtgaaaacttatgtggtgtgtgctttttgacaaa 30206604  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 224  Q
     |||||||||||| |||||||||||||| ||||||||  ||| ||||||||||||| ||||||||||||| ||||||||| || |||||| ||| |||||    
T  30206605 gtagtcatgtttgaattctccaaatacatacattcttgacccattactgattgagcaagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30206704  T
Q  225 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||   |  |||||||||   ||||||||||| ||||||||| ||||||    
T  30206705 aaccgttgtccatcttgatgtcttgaaagaaagatttttggcacaatt 30206752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 30677291 - 30677044
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaat-tttcagagtgaaaacttatgtggtgtgtgttttttgtcaa 123  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||| || || |||||  |||||||||||| |||||| |||    
T  30677291 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgag-gtcaaaaccaatgtggtgtgtgctttttgacaa 30677193  T
Q  124 attagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcca 223  Q
    | | |||||||||   ||||||||||||| |||||||  |||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| ||||    
T  30677192 actggtcatgttttttttctccaaatacatacattctggccccattactaattgagcgagatcatggacaagatcatgcatcttaaaagaaatgtctcca 30677093  T
Q  224 gaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||    
T  30677092 gaatattcatccatctttctatcttgaaagaatgatttttggtacaatt 30677044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 30060350 - 30060599
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 122  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | | || |  || |||||| |||||||||||| |||||| ||    
T  30060350 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtctttattgtcaaaactaatgtggtgtgtgctttttgaca 30060449  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 222  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||  |||||||| || || ||| |||  ||    
T  30060450 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaaggtcatgcatcttgaatgaaatgtcgcc 30060549  T
Q  223 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    |||| |||||||||| || | |||||||||||||||||||||||||||||    
T  30060550 agaaaattcatccatttttctatcttgaaagaatgatttttggtacaatt 30060599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 30242495 - 30242248
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 124  Q
    |||||||||||  |||||||||||||||||||| |||  || ||| || |||||||| | ||   ||| |||||  |||||||||||| |||||| ||||    
T  30242495 aaacaatgttctcaaggattcaacttttttgaaagcattcttatcaaaggataacaagtctttgtagtcaaaaccaatgtggtgtgtgctttttgacaaa 30242396  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 224  Q
     | |||||||||   ||||||||||||| |||||||  |||| ||||||||||||||||||||||||||| ||||||||| || |||||| ||| |||||    
T  30242395 ctggtcatgtttttgttctccaaatacatacattctggccccattactgattgagcgagatcatggacaagatcatgcatcttgaaagaaatgtctccag 30242296  T
Q  225 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||||||||||| ||||  |||||||| |||||||||||||||||||    
T  30242295 aatattcatccattttgctgtcttgaaaaaatgatttttggtacaatt 30242248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 272
Target Start/End: Original strand, 29872233 - 29872404
Alignment:
Q  101 atgtggtgtgtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcat 200  Q
    |||||||||||| |||||| |||| | |||||||||   |||||||||| || |||||||| |||| ||| ||||||||||||||||||||||| |||||    
T  29872233 atgtggtgtgtgctttttgacaaactggtcatgtttttgttctccaaatgcatacattcttgccccattattgattgagcgagatcatggacaagatcat 29872332  T
Q  201 gcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    |||| || |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29872333 gcatcttgaaagaaatgtctccagaatattcatccatcttgccatcttgaaagaatgatttttggtacaatt 29872404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 272
Target Start/End: Original strand, 30749624 - 30749873
Alignment:
Q  23 tcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtca 122  Q
    |||||| ||||||| |||||||||||| ||||||| ||| |||  ||||| |||||| | |  | |  || |||||| || ||||||||| |||| | ||    
T  30749624 tcaaaccatgttcgcaaggattcaactattttgaaagcatccttgtcgaaggataacgagtcgttattgtcaaaactaatatggtgtgtgcttttcgaca 30749723  T
Q  123 aattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttcc 222  Q
    || |||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| ||||||||||||| |||||| || || || ||| |||  ||    
T  30749724 aactagtcaagtttgcattctccaaatacatacattcttgccccattactgattgagcaagatcatggacaagatcatgaatcttgaatgaaatgtcgcc 30749823  T
Q  223 agaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    |||| |||||||||| || | ||||||||||||||||||||| |||||||    
T  30749824 agaaaattcatccatttttctatcttgaaagaatgatttttgatacaatt 30749873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 30331259 - 30331008
Alignment:
Q  20 aagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttg 119  Q
    |||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| |  |||| |||||||||||| || ||| ||||||    
T  30331259 aagtcatacaatgttcgcaaggattcaacttttttgaaggcaccgtcatcgattgataacaaattattggagtcaaaacttatgtgatgggtgctttttg 30331160  T
Q  120 tcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtt 219  Q
    ||||| ||||||||||||||||||||| ||||| | ||| || | ||  || ||||||||| ||||||| || || |||| || | || |||||| |||     
T  30331159 tcaaactagtcatgtttgcattctccagatacatatattgttgctccagtattgattgagcaagatcattgaaaagatcacgcgtctttaaagaaatgtc 30331060  T
Q  220 tccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaat 271  Q
    |  |||||||||||  ||||||   |||| |||||||| ||||||| |||||    
T  30331059 tttagaatattcatagatcttgatgtcttcaaagaatggtttttggcacaat 30331008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 162
Target Start/End: Complemental strand, 17418286 - 17418149
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 124  Q
    |||||||||||| |||||||||||||||||||||||| |||||| || ||||| | | |  ||||||||||||| ||||||||||||| |||||| ||||    
T  17418286 aaacaatgttcgcaaggattcaacttttttgaaggcatcctcattgagtgatagcgagtcatcagagtgaaaacatatgtggtgtgtgctttttgacaaa 17418187  T
Q  125 ttagtcatgtttgcattctccaaatacacacattcttt 162  Q
     || |||||||||||||||| ||||||| |||||||||    
T  17418186 ataatcatgtttgcattctctaaatacatacattcttt 17418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 17983001 - 17983079
Alignment:
Q  136 tgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaa 214  Q
    ||||||||| |||  ||||||||| | ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||    
T  17983001 tgcattctctaaaaccacacattcatgccccgctactgattgagcaagatcatggacgagatcgtgcattttgaaagaa 17983079  T

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Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 26707303 - 26707565
Alignment:
Q  10 ataattctccaagtcaaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgt 109  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||| | || |||| ||||||||||||||||    
T  26707303 ataattcttcaagtcaaacaatgttcgcaaggattcaacttttttgaagataccctcatcgaatgataaaaaagtatcggagttaaaacttatgtggtgt 26707402  T
Q  110 gtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaa 209  Q
    ||| ||||||||||| || ||||||||||||||||||||||||  |||||||  ||| |||||||||||||||||||||||| || ||||||||| || |    
T  26707403 gtgctttttgtcaaactactcatgtttgcattctccaaatacatgcattcttgtcccattactgattgagcgagatcatggataagatcatgcatcttga 26707502  T
Q  210 aagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    ||||| ||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||    
T  26707503 aagaaatgtctccagaatattcacccatcttacagtcttgaaagaatgatttttggtacaatt 26707565  T

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Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 20296705 - 20296458
Alignment:
Q  25 aaacaatgttcgtaaggattcaacttttttgaaggcaccctcatcgaatgataacaaattttcagagtgaaaacttatgtggtgtgtgttttttgtcaaa 124  Q
    |||||||||||| ||||||||||||| ||||||||||||||  | ||  |||||||| | |    ||| |||||  |||||||||||| ||  || ||||    
T  20296705 aaacaatgttcgcaaggattcaacttctttgaaggcacccttgttgatggataacaagtctgtgtagtcaaaaccaatgtggtgtgtgcttcgtgacaaa 20296606  T
Q  125 ttagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccag 224  Q
    ||||| | ||||  || ||||||||||| |||||||||||||  |||||| |||  ||||||||  |||| ||||||||| || ||| || | | || ||    
T  20296605 ttagtaacgtttttatcctccaaatacatacattctttccccactactgaatgaaggagatcataaacaagatcatgcatcttgaaataaatatctctag 20296506  T
Q  225 aatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    |||||||||| || |||   ||||||||||||||||||||||||||||    
T  20296505 aatattcatctattttgatttcttgaaagaatgatttttggtacaatt 20296458  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 52352088 - 52352188
Alignment:
Q  172 tgattgagcgagatcatggacaatatcatgcattttaaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaat 271  Q
    ||||||||| |||||||| |||| ||||||||| || |||||| ||| |||  |||| ||||  ||||||   |||||||||||||| ||||||||||||    
T  52352088 tgattgagcaagatcatgtacaagatcatgcatcttgaaagaaatgtctcctaaataatcattgatcttgatgtcttgaaagaatgacttttggtacaat 52352187  T
Q  272 t 272  Q
    |    
T  52352188 t 52352188  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 272
Target Start/End: Original strand, 7099486 - 7099651
Alignment:
Q  107 tgtgtgttttttgtcaaattagtcatgtttgcattctccaaatacacacattctttccccgttactgattgagcgagatcatggacaatatcatgcattt 206  Q
    |||||| |||||| ||| |||||||  | |||||| || |||  || |||||||| ||||  |||||||||||| ||||||||||| | |||||||||||    
T  7099486 tgtgtgctttttgacaagttagtcacatatgcattatctaaaaccatacattcttgcccccctactgattgagcaagatcatggacgagatcatgcattt 7099585  T
Q  207 taaaagaactgtttccagaatattcatccatcttgcaatcttgaaagaatgatttttggtacaatt 272  Q
    | |||||| |   ||  ||||| |||||||| | |   ||||||||||| ||||||||||||||||    
T  7099586 tgaaagaaatcactcttgaataatcatccatatggatgtcttgaaagaaagatttttggtacaatt 7099651  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 25293986 - 25293947
Alignment:
Q  31 tgttcgtaaggattcaacttttttgaaggcaccctcatcg 70  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  25293986 tgttcgtaaggattcaacttttatgaaggaaccctcatcg 25293947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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