View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14232_high_15 (Length: 258)
Name: NF14232_high_15
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 31896838 - 31896995
Alignment:
| Q |
81 |
attgcaaagagacgaaacttccttcagaaactctgggttcttcaccctccctgttttaaaaaatcacatcattttcattctaacaattgaatttacaaac |
180 |
Q |
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| T |
31896838 |
attgcaaagagacgaaacttccttcagaaactctgggttcttcaccctccctgttttaaaa-atcacatgattttcattctaagaattgaatttacaaac |
31896936 |
T |
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| Q |
181 |
cttcactaaataaagaatacaaaaaatgtttcaatcaacgcctaattttccctacacat |
239 |
Q |
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| T |
31896937 |
cttcactaaataaagaatacaaaaaatgtttcaatgaacgcctaattttccctacacat |
31896995 |
T |
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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 31896792 - 31896722
Alignment:
| Q |
18 |
aattatacgactataacacgagtattataccttgtacttaagttctttgaatatcactgctaaattgcaaa |
88 |
Q |
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| T |
31896792 |
aattatatgactataacacgagtattataccttgtacttaagttctttgaatatcactgctaaattgcaaa |
31896722 |
T |
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