View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14232_high_17 (Length: 252)

Name: NF14232_high_17
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14232_high_17
NF14232_high_17
[»] chr8 (7 HSPs)
chr8 (13-252)||(6424681-6424920)
chr8 (49-225)||(7459917-7460093)
chr8 (49-218)||(6353026-6353195)
chr8 (49-218)||(6363822-6363991)
chr8 (49-201)||(7471519-7471671)
chr8 (52-200)||(6275201-6275349)
chr8 (115-219)||(6332633-6332737)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 6424920 - 6424681
Alignment:
Q  13 aatatcataccttccttgaaatctgtagttagcaaagagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424920 aatatcataccttccttgaaatctgtagttagcaaagagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaatt 6424821  T
Q  113 ttcttagcaacgttagcccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6424820 ttcttagcaacgttagcccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtat 6424721  T
Q  213 atattagtcacaaactcctaatcttatcaacatatgcata 252  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6424720 atattagtcacaaactcctaatcttatcaacatatgcata 6424681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 225
Target Start/End: Complemental strand, 7460093 - 7459917
Alignment:
Q  49 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 148  Q
    |||||||||| |||||||||  | || || || |||||||||||||| ||||| |||||  || | || ||| |  |||||||||||||||||||||  |    
T  7460093 gagtttaacacctttgaagatatacgctctctctacgatggtggaattaagcttcctactgatgtactaagccagattagcccaataccattgttcaaag 7459994  T
Q  149 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatattagtcacaa 225  Q
    ||||||||||| ||||||||| | |    ||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  7459993 aactttttcgaactgatggtgaagctgtacttaagtttccaccaccgaaagtggttcaaggtatatattagttacaa 7459917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 6353195 - 6353026
Alignment:
Q  49 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 148  Q
    |||||||||| |||| |||| ||||| || || ||||| |||||||| ||||| |||||  || | || ||| |  |||| |||||||||||||||| ||    
T  6353195 gagtttaacacctttcaagatgtgcgctctctctacgagggtggaattaagcttcctactgatgtactaagccagattagtccaataccattgttcaagg 6353096  T
Q  149 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatatta 218  Q
    ||||||| ||||||||||||| |  | | ||||||||| ||||||| |||||| ||||||||||||||||    
T  6353095 aacttttccgatctgatggtgaacaagcacttaagtttccaccaccaaaagtgattcaaggtatatatta 6353026  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 6363991 - 6363822
Alignment:
Q  49 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 148  Q
    |||||||||| ||||||||| ||||| || || || || |||||||||| ||| |||||  || | || ||  |  ||||||||||||||||||||| ||    
T  6363991 gagtttaacacctttgaagatgtgcgctcgctctatgaaggtggaatcaggcttcctactgatatactaagtgaacttagcccaataccattgttcaagg 6363892  T
Q  149 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatatatta 218  Q
    ||||||| ||| ||||||||| | |  | ||||||||| ||||||| |||||| |||||||| |||||||    
T  6363891 aacttttccgaactgatggtgaagcggcacttaagtttccaccaccaaaagtgattcaaggtttatatta 6363822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 7471671 - 7471519
Alignment:
Q  49 gagtttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacgg 148  Q
    |||||||||| |||||||||    || || || |||||||||||||| ||||| |||||  || | || |||||  |||||||||||||||||||||  |    
T  7471671 gagtttaacacctttgaagatacacgatctctctacgatggtggaattaagcttcctactgatgtactaagcaagattagcccaataccattgttcaaag 7471572  T
Q  149 aactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtg 201  Q
    ||| ||||||| ||||||||| | ||   ||||||||| ||||||||||||||    
T  7471571 aacattttcgaactgatggtgaagcagtacttaagtttccaccacctaaagtg 7471519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 6275349 - 6275201
Alignment:
Q  52 tttaacaactttgaagacgtgcggtcactttacgatggtggaatcaagctacctaccaattttcttagcaacgttagcccaataccattgttcacggaac 151  Q
    ||||||| |||||| || ||||| ||| |||| |||||||| || ||  ||||||| | |   ||||||||  ||||||| |||||||| |||| |||||    
T  6275349 tttaacagctttgatgatgtgcgatcattttatgatggtgggattaaattacctactagtacacttagcaaacttagccctataccatttttcaaggaac 6275250  T
Q  152 tttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagt 200  Q
    | || ||| ||||||||| |||  |||| |||||| |||||||||||||    
T  6275249 tcttccgaactgatggtgaatcggccctaaagtttccaccacctaaagt 6275201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 6332737 - 6332633
Alignment:
Q  115 cttagcaacgttagcccaataccattgttcacggaactttttcgatctgatggtgcatcaacccttaagttttcaccacctaaagtggttcaaggtatat 214  Q
    ||||||||  ||||||| |||||| |||||  ||||||  |  || ||||||||| |||  |||| |||||| ||| ||||||||||||| ||||||| |    
T  6332737 cttagcaaaattagccccataccagtgttccaggaactcctcagaactgatggtgaatcggccctaaagtttccacgacctaaagtggttgaaggtatct 6332638  T
Q  215 attag 219  Q
    |||||    
T  6332637 attag 6332633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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