View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14232_high_8 (Length: 309)
Name: NF14232_high_8
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 38 - 294
Target Start/End: Original strand, 18191289 - 18191546
Alignment:
| Q |
38 |
cctgatggaactagtttatttcatgtcccacaacctttttatggttatagcnnnnnnn-gtccaatgcagggtctgtgtacaatagtgtagatttttgta |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191289 |
cctgatggaactagtttatttcatgtcccacaacctttttatggtaatagcttttttttgtccaatgcagggtctgtgtacaatagtgtagatttttgta |
18191388 |
T |
|
| Q |
137 |
agagattgtgtggtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191389 |
agagattgtgtggtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattg |
18191488 |
T |
|
| Q |
237 |
tctagaaatttctcttaatcttccttaaacaactccataaataaatggatgatctttt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191489 |
tctagaaatttctcttaatcttccttaaacaactccataaataaatggatgatctttt |
18191546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 42277087 - 42277376
Alignment:
| Q |
7 |
tgtgtagctgacatacttattatgatatttacctgatggaactagtttatttcatgtcccacaacctttttatggttatagcnnnnnnn-gtccaatgca |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
42277087 |
tgtgtagctgacatacttgttatgatatttacctgatggaattagtttgtttcat-tccc-caacctttttatggtaataggtgatttttgtccaatgca |
42277184 |
T |
|
| Q |
106 |
gggtctgtgtacaatagtgtagatttttgtaagagattgtgtggtgtttccattatcaggaggt-ttctgtcttttacaaagtataaatcatctgaatga |
204 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||| ||| |||||||||||| ||| ||||||| | || | ||||||||||||| | |
|
|
| T |
42277185 |
gggtctgtgtacagcggtgtagatttttgtaagaggttgtgtggtgtctccgttatcaggaggtattccgtctttttcctagcagaaatcatctgaatta |
42277284 |
T |
|
| Q |
205 |
taaaatattggcatgattggttgaatatattgtctagaaatt--tctcttaatcttccttaaacaactccataaataaatggatgatctttt |
294 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42277285 |
taaaatactggcatcattggttgaatatattgtctaaatttttctctcttaatcttccttaaataactccataaataaatggatgatctttt |
42277376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 24235470 - 24235522
Alignment:
| Q |
100 |
aatgcagggtctgtgtacaatagtgtagatttttgtaagagattgtgtggtgt |
152 |
Q |
| |
|
|||||||| ||||| |||| | |||| |||||||||||||| ||||||||||| |
|
|
| T |
24235470 |
aatgcaggttctgtatacactggtgtggatttttgtaagaggttgtgtggtgt |
24235522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University