View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14232_low_10 (Length: 296)
Name: NF14232_low_10
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 31541032 - 31540867
Alignment:
| Q |
117 |
gttagaatttatgagtttgtgttgatagaagatgattttggtgtttttgttgttatgtactgagatatgggtttgatgannnnnnngataaaagaggaat |
216 |
Q |
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| T |
31541032 |
gttagagtttatgagtttgtgttgatagaagatgattttggtgtttttgttgttgtgtattgagatatgggtttgatgatttttttgataaaagaggaat |
31540933 |
T |
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| Q |
217 |
ttagtgttgaagatgaaattgaagaaggattaataaaatgataatatagattaatagtgacgaagg |
282 |
Q |
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| T |
31540932 |
ttggtgttgaagatgaaattgaagaaggatgaataaaatgataatatagattaatagtgacgaagg |
31540867 |
T |
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Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 117 - 282
Target Start/End: Complemental strand, 8810136 - 8809970
Alignment:
| Q |
117 |
gttagaatttatgagtttgtgttgatagaagatgattttggtgtttttgttgttatgtactgagatatgggtttgatgannnnnnn-gataaaagaggaa |
215 |
Q |
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| T |
8810136 |
gttagaatttatgagtttgtgttgatagaagatgattttggtgtttttgttgttgtgtagtgagatatgggtttgatgattttttttgataaaagaggaa |
8810037 |
T |
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| Q |
216 |
tttagtgttgaagatgaaattgaagaaggattaataaaatgataatatagattaatagtgacgaagg |
282 |
Q |
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| T |
8810036 |
tttggtgttgaagatgaaattgaagaaggatgaataaaatgataatatagattaatagtgacgaagg |
8809970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13231274 - 13231215
Alignment:
| Q |
1 |
aagtgacatacttggggcgtgtctagaagccactcttttggcgtacataaccttgtgaaa |
60 |
Q |
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| T |
13231274 |
aagtgacatacttgggacgtgtccagaagccactcttttagcatacctaaccttgtgaaa |
13231215 |
T |
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