View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14232_low_2 (Length: 736)

Name: NF14232_low_2
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14232_low_2
NF14232_low_2
[»] chr3 (11 HSPs)
chr3 (110-242)||(10521366-10521498)
chr3 (110-242)||(10667610-10667742)
chr3 (247-358)||(10667228-10667339)
chr3 (247-358)||(10520986-10521097)
chr3 (59-112)||(10521523-10521576)
chr3 (59-112)||(10667767-10667820)
chr3 (458-542)||(10520798-10520882)
chr3 (2-55)||(10667842-10667895)
chr3 (458-522)||(10667057-10667121)
chr3 (2-55)||(10521598-10521651)
chr3 (59-102)||(10532530-10532573)
[»] chr7 (1 HSPs)
chr7 (472-526)||(45526100-45526154)
[»] chr1 (1 HSPs)
chr1 (472-526)||(4671111-4671165)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 10521498 - 10521366
Alignment:
Q  110 atcaagcgagctgattttcatccatttattaggcctattctgaaaagaacacacaaattataaaatatttagtaacagctcaattaataaaatgttaact 209  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||| ||||||| |||||||||||  |||||||||    
T  10521498 atcaagtgagctgattttcatccatttattatgcctattctgaaaagaagacacaaaatatcaaatattgagtaacacctcaattaatattatgttaact 10521399  T
Q  210 ggctaacactaacactttcaacagaatgattct 242  Q
    ||| ||||| |||| ||||||||||||||||||    
T  10521398 ggcaaacaccaacagtttcaacagaatgattct 10521366  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 10667742 - 10667610
Alignment:
Q  110 atcaagcgagctgattttcatccatttattaggcctattctgaaaagaacacacaaattataaaatatttagtaacagctcaattaataaaatgttaact 209  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||| ||||||| |||||||||||  ||||||| |    
T  10667742 atcaagtgagctgattttcatccatttattatgcctattctgaaaagaagacacaaaatatcaaatattgagtaacacctcaattaatattatgttaatt 10667643  T
Q  210 ggctaacactaacactttcaacagaatgattct 242  Q
    ||| |||||||||| ||||||||||||||||||    
T  10667642 ggcaaacactaacagtttcaacagaatgattct 10667610  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 10667339 - 10667228
Alignment:
Q  247 taaacaaacttataaattacagaaaactgaaatttctttgactgtatgtttcaagaaatttggtgaaaggaggtaagttaagaaaataatgatcaaattt 346  Q
    |||||||||||||||| |||||||||||||||||||||   || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10667339 taaacaaacttataaaatacagaaaactgaaatttcttcacctatatgtttcaagaaatttggtgaaaggagggaagttaagaaaataatgatcaaattt 10667240  T
Q  347 tcatttacaatc 358  Q
     |||||| ||||    
T  10667239 ccatttagaatc 10667228  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 247 - 358
Target Start/End: Complemental strand, 10521097 - 10520986
Alignment:
Q  247 taaacaaacttataaattacagaaaactgaaatttctttgactgtatgtttcaagaaatttggtgaaaggaggtaagttaagaaaataatgatcaaattt 346  Q
    ||||||| |||||||| |||||||||||||||||||||   || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  10521097 taaacaaccttataaaatacagaaaactgaaatttcttcacctatatgtttcaagaaatttggtgaaaggagggaagttaagaaaataatgatcaaaatt 10520998  T
Q  347 tcatttacaatc 358  Q
     |||||| ||||    
T  10520997 ccatttagaatc 10520986  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 10521576 - 10521523
Alignment:
Q  59 atgcatttggctcctctaaaacaagcttacaagaagaatcatgaactcaaaatc 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10521576 atgcatttggctcctctaaaacaagcttacaagaggaatcatgaactcaaaatc 10521523  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 10667820 - 10667767
Alignment:
Q  59 atgcatttggctcctctaaaacaagcttacaagaagaatcatgaactcaaaatc 112  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10667820 atgcatttggctcctctaaaacaagcttacaagaggaatcatgaactcaaaatc 10667767  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 10520882 - 10520798
Alignment:
Q  458 aaaaaatattattgtattttttcttctaattttacccctcacttgataatttcttacaattttatcgttttttgccgatcaaaac 542  Q
    |||||||||| | |||||||||||||||||||||||||| | || || ||||||| ||||||||| ||| ||||||||| |||||    
T  10520882 aaaaaatattgtggtattttttcttctaattttacccctaatttaattatttcttccaattttattgttctttgccgataaaaac 10520798  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10667895 - 10667842
Alignment:
Q  2 tgaagtcaaatgataagaaaatacataatgaatgctagccaagtaaatccaatc 55  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||    
T  10667895 tgaagtcaaatgataagaaaatacataattaatactagctaagcaaatccaatc 10667842  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 10667121 - 10667057
Alignment:
Q  458 aaaaaatattattgtattttttcttctaattttacccctcacttgataatttcttacaattttat 522  Q
    |||||||||| | ||||||||||||||| |||||||||| | || || |||||||||||||||||    
T  10667121 aaaaaatattgtggtattttttcttctagttttacccctaatttaattatttcttacaattttat 10667057  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 10521651 - 10521598
Alignment:
Q  2 tgaagtcaaatgataagaaaatacataatgaatgctagccaagtaaatccaatc 55  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||| |||| |||||    
T  10521651 tgaagtcaaatgataagaaaatacataattaatactagctaagcaaattcaatc 10521598  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 10532573 - 10532530
Alignment:
Q  59 atgcatttggctcctctaaaacaagcttacaagaagaatcatga 102  Q
    |||||||||  |||||||||||||| ||||||||||||||||||    
T  10532573 atgcatttgaatcctctaaaacaagtttacaagaagaatcatga 10532530  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 526
Target Start/End: Original strand, 45526100 - 45526154
Alignment:
Q  472 tattttttcttctaattttacccctcacttgataatttcttacaattttatcgtt 526  Q
    |||||||||||| ||| |||||| ||||||||| |||| |||| |||||||||||    
T  45526100 tattttttcttccaatattacccttcacttgattattttttaccattttatcgtt 45526154  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 4671165 - 4671111
Alignment:
Q  472 tattttttcttctaattttacccctcacttgataatttcttacaattttatcgtt 526  Q
    |||||||||||  |||||||||| |||||| || ||||||||||||||| |||||    
T  4671165 tattttttctttcaattttacccttcacttaattatttcttacaattttctcgtt 4671111  T

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