View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14232_low_25 (Length: 224)
Name: NF14232_low_25
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 6424621 - 6424436
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6424621 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattg |
6424522 |
T |
|
| Q |
120 |
ttaactattttgtaaacaatatgttatttctataattggtaacattattgcttgatacaattaattcaggagttcccacataagag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6424521 |
ttaactattttgtaaacaatatgttatttctataattggtaacattattgcttgaaacaattaattcaggagttcccacataagag |
6424436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 6363730 - 6363627
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattg |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6363730 |
ctgcatggatgactgatgaggaatttgcaagggagatgattgctggggtgaatccacacatcataaaaaaactcttggtaaagttaatggtttaacattg |
6363631 |
T |
|
| Q |
120 |
ttaa |
123 |
Q |
| |
|
|||| |
|
|
| T |
6363630 |
ttaa |
6363627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 6352915 - 6352822
Alignment:
| Q |
30 |
gactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagtttagcattgttaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||| | ||||||| |
|
|
| T |
6352915 |
gactgatgaggaatttgcaagggagatgattgctggggtgaacccacacatcatcaaaaaactttcggtaaagctaatagtttaactttgttaa |
6352822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6391540 - 6391469
Alignment:
| Q |
19 |
actgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaa |
90 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
6391540 |
actgcatggatgactgatgaggaatttgcaagggagatgattgctggtgtgaatccaaacgtcatcaaaaaa |
6391469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 6321964 - 6321871
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa-aactcacggtaaagttaatagttta |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |||| || ||| |||||| ||||||||||| |
|
|
| T |
6321964 |
ctgcgtggatgactgatgaagaatttgcaagggagatgattgctggtgtgaatccacacattataaaaagaattca-ggtaaacttaatagttta |
6321871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 6332538 - 6332445
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagttta |
113 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||| || |||||||| |
|
|
| T |
6332538 |
ctgcatggatgactgatggagaatttgcaagggagatgattgctggtgtgaatccacacataatcaaaagacttcaggtaaacttgatagttta |
6332445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 7459714 - 7459642
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaact |
92 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
7459714 |
ctgcatggatgactgatgaggaattcgcaaggcagatgattgctggggtgaatcctcatatcatcaaaaaact |
7459642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 6289577 - 6289489
Alignment:
| Q |
25 |
tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaaaactcacggtaaagttaatagttta |
113 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||||||| |||||||||||||| ||||||| ||| |||||| || |||||||| |
|
|
| T |
6289577 |
tggatgactgatgaagaatttacaagagagatgattgctggtgtgaatccacacattatcaaaagacttcaggtaaacttcatagttta |
6289489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 6275090 - 6275002
Alignment:
| Q |
25 |
tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatccacacatcatcaaaa-aactcacggtaaagttaatagttta |
113 |
Q |
| |
|
||||||||||| || |||||| |||| |||||||||||||| || ||||||||||||||||||| || ||| |||||| ||||||||||| |
|
|
| T |
6275090 |
tggatgactgacgaagaatttacaagagagatgattgctggtgtaaatccacacatcatcaaaagaattca-ggtaaacttaatagttta |
6275002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 6352798 - 6352723
Alignment:
| Q |
123 |
actattttgtaaacaatatgttatttctataattggtaacattattgcttgatacaattaattcaggagttcccac |
198 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||| ||||||||||||| || | ||||| |||||||| |||| |
|
|
| T |
6352798 |
actattttgtaaacattatgttatttttgtaattggtgacattattgcttgctaaatttaatacaggagtttccac |
6352723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 6410702 - 6410646
Alignment:
| Q |
19 |
actgcgtggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcca |
75 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||||||| |
|
|
| T |
6410702 |
actgcatggatgactgatgaggaattcgcaagagagataattgctggtgtgaatcca |
6410646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 6370624 - 6370575
Alignment:
| Q |
25 |
tggatgactgatgaggaatttgcaagggagatgattgctggagtgaatcc |
74 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
6370624 |
tggatggctgatgaggaatttgcaagacagatgattgctggtgtgaatcc |
6370575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 9604085 - 9604133
Alignment:
| Q |
20 |
ctgcgtggatgactgatgaggaatttgcaagggagatgattgctggagt |
68 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| |||||| |||||||||| |
|
|
| T |
9604085 |
ctgcatggatgactgatgaagaatttggaagagagatggttgctggagt |
9604133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University