View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14232_low_5 (Length: 528)
Name: NF14232_low_5
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_low_5 |
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| [»] scaffold0283 (1 HSPs) |
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Alignment Details
Target: scaffold0283 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 211 - 463
Target Start/End: Original strand, 19408 - 19662
Alignment:
| Q |
211 |
tgtgtttggttctgttgggactgaaattgattttgacttaattgactttctaaaatgatcttggatgaaagtgagttcaacataaaatgatttatatatt |
310 |
Q |
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| T |
19408 |
tgtgtttgattctgttggggctgaaattgattttgacttaattgactttctaaaatgatcttggatgaaagtgagttcagcataaaatgatttaaatatt |
19507 |
T |
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| Q |
311 |
tggtt---tcacnnnnnnnntgtgatatttatccattgagtatgtttgaatagtttgcatcagaattgtttttgtgtgtatatatgttaataagtttgac |
407 |
Q |
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| T |
19508 |
tggttagttcacaaaaaaaa-gtgatatttatccatcaagtatgtttgaatagtttggatcagaattgtttttttgtgtatatatgttaataagtttgag |
19606 |
T |
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| Q |
408 |
catggtttctatgtgtcaacagaagctagaaatagtagcttttaggtagaactgat |
463 |
Q |
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| T |
19607 |
cattgattctatgtctcaacagaagctagaaatagtagcttttatgtagaactgat |
19662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 211 - 463
Target Start/End: Original strand, 42725434 - 42725688
Alignment:
| Q |
211 |
tgtgtttggttctgttgggactgaaattgattttgacttaattgactttctaaaatgatcttggatgaaagtgagttcaacataaaatgatttatatatt |
310 |
Q |
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| T |
42725434 |
tgtgtttgattctgttggggctgaaattgattttgacttaattgactttctaaaatgatcttggatgaaagtgagttcagcataaaatgatttaaatatt |
42725533 |
T |
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| Q |
311 |
tggtt---tcacnnnnnnnntgtgatatttatccattgagtatgtttgaatagtttgcatcagaattgtttttgtgtgtatatatgttaataagtttgac |
407 |
Q |
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| T |
42725534 |
tggttagttcacaaaaaaaa-gtgatatttatccatcaagtatgtttgaatagtttggatcagaattgtttttttgtgtatatatgttaataagtttgag |
42725632 |
T |
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| Q |
408 |
catggtttctatgtgtcaacagaagctagaaatagtagcttttaggtagaactgat |
463 |
Q |
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| T |
42725633 |
cattgattctatgtctcaacagaagctagaaatagtagcttttatgtagaactgat |
42725688 |
T |
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