View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14232_low_7 (Length: 397)
Name: NF14232_low_7
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 21302573 - 21302949
Alignment:
| Q |
16 |
atacattccctttcaaaaataa-----atacattcaaactcaacggtaagcacgcaaaccctagaagtggacgatattttggaagtcgtagatgagat-- |
108 |
Q |
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| T |
21302573 |
atacattccctttcaaaaaaaataataatacattcaaactcaatagtaaacacacaaaccctagaagtggacgatattttggaagtcgtagatgagactt |
21302672 |
T |
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| Q |
109 |
----gttttagatttgaaaggnnnnnnnngaa-gatcaaattagaacttagaaaggaagattagttcagttgataagaaattgacttatctttt-tgtga |
202 |
Q |
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| T |
21302673 |
tagggttttagatttgaaaggaaaaaaaaaaaagatcaaatgagaacctagaaaggaagattagttcagttgataagaaattgacttatcttttttgtga |
21302772 |
T |
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| Q |
203 |
atggtatgcaagcatctcccttacgttcattgagctttaagtctttctctactcctgatgagtctccaaaactctattcactcaaaatttcttttatcaa |
302 |
Q |
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| T |
21302773 |
atggtatgcaaacatctcccttacgttcattgagctttgagtctttctttaatcttgatgagtctccaaaattctactcactcaaattttcttttatcaa |
21302872 |
T |
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| Q |
303 |
acaaatatttaagacttgagtagatattattatttaaaaatgaaaataaatgttctgtatctatccgaatcacctcc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21302873 |
acaaatatttaagacttgagtagatattattatttaaaaatgaaaataaatgttctttatctatccgaatcacctcc |
21302949 |
T |
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