View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14232_low_9 (Length: 309)
Name: NF14232_low_9
Description: NF14232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14232_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 38 - 294
Target Start/End: Original strand, 18191289 - 18191546
Alignment:
| Q |
38 |
cctgatggaactagtttatttcatgtcccacaacctttttatggttatagcnnnnnnn-gtccaatgcagggtctgtgtacaatagtgtagatttttgta |
136 |
Q |
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| T |
18191289 |
cctgatggaactagtttatttcatgtcccacaacctttttatggtaatagcttttttttgtccaatgcagggtctgtgtacaatagtgtagatttttgta |
18191388 |
T |
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| Q |
137 |
agagattgtgtggtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattg |
236 |
Q |
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| T |
18191389 |
agagattgtgtggtgtttccattatcaggaggtttctgtcttttacaaagtataaatcatctgaatgataaaatattggcatgattggttgaatatattg |
18191488 |
T |
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| Q |
237 |
tctagaaatttctcttaatcttccttaaacaactccataaataaatggatgatctttt |
294 |
Q |
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| T |
18191489 |
tctagaaatttctcttaatcttccttaaacaactccataaataaatggatgatctttt |
18191546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 42277087 - 42277376
Alignment:
| Q |
7 |
tgtgtagctgacatacttattatgatatttacctgatggaactagtttatttcatgtcccacaacctttttatggttatagcnnnnnnn-gtccaatgca |
105 |
Q |
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| T |
42277087 |
tgtgtagctgacatacttgttatgatatttacctgatggaattagtttgtttcat-tccc-caacctttttatggtaataggtgatttttgtccaatgca |
42277184 |
T |
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| Q |
106 |
gggtctgtgtacaatagtgtagatttttgtaagagattgtgtggtgtttccattatcaggaggt-ttctgtcttttacaaagtataaatcatctgaatga |
204 |
Q |
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| T |
42277185 |
gggtctgtgtacagcggtgtagatttttgtaagaggttgtgtggtgtctccgttatcaggaggtattccgtctttttcctagcagaaatcatctgaatta |
42277284 |
T |
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| Q |
205 |
taaaatattggcatgattggttgaatatattgtctagaaatt--tctcttaatcttccttaaacaactccataaataaatggatgatctttt |
294 |
Q |
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| T |
42277285 |
taaaatactggcatcattggttgaatatattgtctaaatttttctctcttaatcttccttaaataactccataaataaatggatgatctttt |
42277376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 24235470 - 24235522
Alignment:
| Q |
100 |
aatgcagggtctgtgtacaatagtgtagatttttgtaagagattgtgtggtgt |
152 |
Q |
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| T |
24235470 |
aatgcaggttctgtatacactggtgtggatttttgtaagaggttgtgtggtgt |
24235522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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