View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14233_high_1 (Length: 426)
Name: NF14233_high_1
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14233_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 204 - 407
Target Start/End: Original strand, 25933843 - 25934046
Alignment:
| Q |
204 |
gttagcatgttgcacaaaaataaaataccgttcatacctagtcacatcatggattgagtgaatttataacatcatacttagaacaagttgggtttcatca |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
25933843 |
gttagcatgctgcacaaaaataaaataccgttcatacgtagttacatcatggattgagtgaatttataacatcatacttagaacaagtctggtttcatca |
25933942 |
T |
|
| Q |
304 |
tgtccgtgaaataatagaatattgaattggaagaagtttcataacttctctagttgaacgatgaagacccgaggcacacatttttcaattttcaacgggg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25933943 |
tgtccgtgaaataatagaatattgaattggaagaagtttcataacttctctaattgaacgatgaagacccaaggcacacatttttcaattttcaacgggg |
25934042 |
T |
|
| Q |
404 |
gaat |
407 |
Q |
| |
|
|||| |
|
|
| T |
25934043 |
gaat |
25934046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25933640 - 25933779
Alignment:
| Q |
1 |
aaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatgcggttgtat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25933640 |
aaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgttttagttcgaataatgtgaagaaagactgatgcggttgtat |
25933739 |
T |
|
| Q |
101 |
cttaaggctgagtatattatggcgagccaatacaacccac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25933740 |
cttaaggctgagtatattatggcgagccaacacaacccac |
25933779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 28958320 - 28958381
Alignment:
| Q |
21 |
ttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaa |
82 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
28958320 |
ttaagcttcttgataatgaggttgatgtagaagacatgtttaggttcgaagaaggtggagaa |
28958381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 32494005 - 32493938
Alignment:
| Q |
23 |
aagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatg |
91 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||| ||| |||||||||| |||| || ||||| |
|
|
| T |
32494005 |
aagcttcttgataatgacgttgatttagaagacatgttt-tgtttgaataaggtggagaaggagtgatg |
32493938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 8168718 - 8168826
Alignment:
| Q |
19 |
ttttaagcttcttgat-aatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatgcggttgtatcttaaggctgagtatat |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || | |||||| ||||||| | | | ||||| ||| |||| |||||||| |||| | |||||| || |
|
|
| T |
8168718 |
ttttaagcttcttgaggaatgacattgatgtaaaatatatgttttggttcgaagaggataaagaaggaccgatgtggttgtatgttaaagttgagtagat |
8168817 |
T |
|
| Q |
118 |
tatggcgag |
126 |
Q |
| |
|
|||| |||| |
|
|
| T |
8168818 |
tatgtcgag |
8168826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University