View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14233_high_4 (Length: 342)

Name: NF14233_high_4
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14233_high_4
NF14233_high_4
[»] chr3 (7 HSPs)
chr3 (83-306)||(5112979-5113197)
chr3 (3-83)||(5112766-5112846)
chr3 (221-323)||(10950531-10950633)
chr3 (267-318)||(51119164-51119215)
chr3 (268-318)||(20886193-20886243)
chr3 (224-284)||(18680454-18680514)
chr3 (26-70)||(27820526-27820570)
[»] chr8 (6 HSPs)
chr8 (224-324)||(14141014-14141113)
chr8 (224-322)||(29040349-29040446)
chr8 (42-82)||(10647363-10647403)
chr8 (3-83)||(14625845-14625925)
chr8 (229-324)||(11221661-11221756)
chr8 (228-286)||(6430042-6430100)
[»] chr2 (8 HSPs)
chr2 (83-323)||(7707105-7707341)
chr2 (221-316)||(13517050-13517145)
chr2 (24-83)||(7706923-7706982)
chr2 (267-318)||(12556814-12556865)
chr2 (267-318)||(25937960-25938011)
chr2 (268-318)||(26292105-26292155)
chr2 (268-318)||(26652346-26652396)
chr2 (267-324)||(4450998-4451055)
[»] chr7 (5 HSPs)
chr7 (221-323)||(3733615-3733717)
chr7 (247-319)||(23803792-23803864)
chr7 (223-322)||(23016319-23016418)
chr7 (268-318)||(23007980-23008030)
chr7 (267-319)||(9891197-9891249)
[»] chr4 (11 HSPs)
chr4 (232-324)||(52998832-52998924)
chr4 (260-324)||(28572452-28572516)
chr4 (263-324)||(12880466-12880527)
chr4 (253-286)||(17671426-17671459)
chr4 (252-317)||(18746354-18746419)
chr4 (268-324)||(12216148-12216204)
chr4 (268-318)||(5529336-5529386)
chr4 (268-318)||(9264024-9264074)
chr4 (246-319)||(18467767-18467840)
chr4 (269-318)||(19547738-19547787)
chr4 (224-284)||(5750416-5750476)
[»] chr1 (6 HSPs)
chr1 (227-324)||(8746839-8746935)
chr1 (267-318)||(27910247-27910298)
chr1 (227-317)||(13159379-13159469)
chr1 (221-286)||(15072915-15072980)
chr1 (231-324)||(36977187-36977279)
chr1 (42-70)||(25784342-25784370)
[»] scaffold1668 (1 HSPs)
scaffold1668 (223-319)||(585-681)
[»] chr5 (5 HSPs)
chr5 (223-286)||(16811143-16811206)
chr5 (224-324)||(26253878-26253978)
chr5 (267-318)||(23013736-23013787)
chr5 (268-318)||(13692972-13693022)
chr5 (221-319)||(17043891-17043988)
[»] chr6 (3 HSPs)
chr6 (243-317)||(24322094-24322168)
chr6 (42-83)||(11005079-11005120)
chr6 (42-83)||(24322437-24322478)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 83 - 306
Target Start/End: Original strand, 5112979 - 5113197
Alignment:
Q  83 acctaatctaagatgattaatactgattaggtatgtcacactcccccgggcataaagtcattaaactatgcgatatatatatgaaaattcaataatctca 182  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5112979 acctaatctaaaatgattaatactgattaggtatgtcacactcctcagggcataaagtcattaaactatgcg--atatatatgaaaattcaataatctca 5113076  T
Q  183 aacaataagtgaataaaagatcacttgcattnnnnnnntccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatgg 282  Q
    |||||||||||||||||||   |||||||||       |||||||||||||||||| |||||||||||| |||||||||  ||| |||||||||||||||    
T  5113077 aacaataagtgaataaaag---acttgcattaaaaaaatccaacaaataaatagaggtccatcttatagtcctaatcaattgttctttagttactcatgg 5113173  T
Q  283 taacgaaagacacaatatacaaga 306  Q
    ||||||||||||||||||||||||    
T  5113174 taacgaaagacacaatatacaaga 5113197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 5112766 - 5112846
Alignment:
Q  3 ctctcaaagataattgaaatgtagcatagttggaatttataaattgtcatctaaaggaaccacttttatatatgaatctta 83  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5112766 ctctcaaagataattgaaatgtagcatagtttgaatttataaattgtcatctaaaggaaccacttttatatatcaatctta 5112846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 10950531 - 10950633
Alignment:
Q  221 tccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactc 320  Q
    ||||||||| |||||||| | ||||||| | || |||| || || |||||||||||| ||| |||| ||||||| | |||| ||||||||||||||||||    
T  10950531 tccaacaaacaaatagaggttcatcttagaaccttaattaataggtgtttagttacttatgttaactaaagacaaattataaaagaaataaaacatactc 10950630  T
Q  321 taa 323  Q
    |||    
T  10950631 taa 10950633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 51119215 - 51119164
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  51119215 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 51119164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 20886193 - 20886243
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  20886193 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 20886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 18680454 - 18680514
Alignment:
Q  224 aacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggta 284  Q
    ||||||||||||||| | ||||||| | | ||||||  ||| |||||||||||||||||||    
T  18680454 aacaaataaatagaggtacatcttagaactctaatcttaaggtgtttagttactcatggta 18680514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 27820570 - 27820526
Alignment:
Q  26 gcatagttggaatttataaattgtcatctaaaggaaccactttta 70  Q
    ||||||| | ||||| |||||||||||||||| ||||||||||||    
T  27820570 gcatagtagaaatttctaaattgtcatctaaaagaaccactttta 27820526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 14141113 - 14141014
Alignment:
Q  224 aacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaa 323  Q
    ||||||||||||||| | ||||||| | ||||||||||||| ||||| ||||||||||||||| |||||||||||  | ||||||||||  |||||||||    
T  14141113 aacaaataaatagaggttcatcttaaa-ccctaatcaaaaggtgttttgttactcatggtaacaaaagacacaattcaaaagaaataaataatactctaa 14141015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 322
Target Start/End: Complemental strand, 29040446 - 29040349
Alignment:
Q  224 aacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactcta 322  Q
    ||||||||||||||||| |||||| || |||| |||||||| ||||||||||||||| ||||| ||| ||| |||  | ||| |||||||| |||||||    
T  29040446 aacaaataaatagagattcatcttttaacccttatcaaaaggtgtttagttactcat-gtaacaaaatacataatcaaaaagcaataaaacttactcta 29040349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 10647363 - 10647403
Alignment:
Q  42 taaattgtcatctaaaggaaccacttttatatatgaatctt 82  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  10647363 taaattgtcatctaaagaaaccacttttacatatgaatctt 10647403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 14625845 - 14625925
Alignment:
Q  3 ctctcaaagataattgaaatgtagcatagttggaatttataaattgtcatctaaaggaaccacttttatatatgaatctta 83  Q
    |||||| || ||||||||| | || ||||||  ||||  ||||||||||||||  ||||||||||||| ||||||||||||    
T  14625845 ctctcataggtaattgaaaagaagaatagttcaaattcctaaattgtcatctatcggaaccacttttaaatatgaatctta 14625925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 11221661 - 11221756
Alignment:
Q  229 ataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    |||||||||| | ||| ||| | ||||||||||||  |||||||||||| |||||||| ||||| |  ||| | |||||||||||| |||| ||||    
T  11221661 ataaatagaggttcatattagaaccctaatcaaaatgtgtttagttactaatggtaacaaaagatatgatacaaaagaaataaaacttactataag 11221756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 6430100 - 6430042
Alignment:
Q  228 aataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaac 286  Q
    ||||||||||||| ||||||| |  | |||||||||| |||||||||||||||| ||||    
T  6430100 aataaatagagattcatcttacaatcttaatcaaaaggtgtttagttactcatgataac 6430042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 323
Target Start/End: Original strand, 7707105 - 7707341
Alignment:
Q  83 acctaatctaagatgattaatactgattaggtatgtcacactcccccgggcataaagtcattaaactatgcgatatatatatgaaaattcaata-atctc 181  Q
    |||||||||||||| | | | ||||| ||||||||||| |||| || | |||| ||| ||||| | |||||||||  |||  ||||||| |||| |||||    
T  7707105 acctaatctaagattagtcacactgactaggtatgtcaaactctccagagcatgaaggcattatattatgcgatacttat--gaaaatttaatagatctc 7707202  T
Q  182 aaacaataagtgaataaaagatcacttgcattnnnnnnntccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatg 281  Q
    |||  |||| |||| ||||||   |||||||        ||||||||||||||| || |  |||||| | ||||||||||| | ||||||||||||||||    
T  7707203 aaatcataactgaagaaaaga---cttgcatgaacataatccaacaaataaataaaggttgatcttagaaccctaatcaaagggtgtttagttactcatg 7707299  T
Q  282 gtaacgaaagacacaatatacaagaaataaaacatactctaa 323  Q
    ||||| ||||| | |||| | ||||||||||| |||||||||    
T  7707300 gtaacaaaagatataatacaaaagaaataaaatatactctaa 7707341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 316
Target Start/End: Complemental strand, 13517145 - 13517050
Alignment:
Q  221 tccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacat 316  Q
    ||||||||| |||||||||| ||||| | | || ||||||| || ||||||||||||||||||||| ||||| | | || | ||||||||||||||    
T  13517145 tccaacaaacaaatagagattcatctcagaaccttaatcaataggtgtttagttactcatggtaactaaagataaattaaaaaagaaataaaacat 13517050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 7706923 - 7706982
Alignment:
Q  24 tagcatagttggaatttataaattgtcatctaaaggaaccacttttatatatgaatctta 83  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||| |||  |||||||    
T  7706923 tagcatagttgaaattcttaaattgtcatctaaaggaaccacttttacatacaaatctta 7706982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 12556865 - 12556814
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  12556865 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 12556814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 25937960 - 25938011
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  25937960 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 25938011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 26292105 - 26292155
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  26292105 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 26292155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 26652396 - 26652346
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  26652396 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 26652346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 4450998 - 4451055
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    ||||||||||||||| |||  ||| ||| | |||| ||||||||||||||||||||||    
T  4450998 gtttagttactcatgataattaaaaacaaattataaaagaaataaaacatactctaag 4451055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 323
Target Start/End: Complemental strand, 3733717 - 3733615
Alignment:
Q  221 tccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactc 320  Q
    |||||||||||||||||| | |||| ||   || |||||||||| |||||||||||||||| |||| ||||||| |||    ||||||||||||||||||    
T  3733717 tccaacaaataaatagaggttcatcataataccttaatcaaaaggtgtttagttactcatgataacaaaagacataatcacaaagaaataaaacatactc 3733618  T
Q  321 taa 323  Q
    |||    
T  3733617 taa 3733615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 23803792 - 23803864
Alignment:
Q  247 tatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatact 319  Q
    |||| ||||||| || || |||||||||||||||| |||| |||||||  ||| | |||||||||||||||||    
T  23803792 tataaccctaataaataggtgtttagttactcatgataacaaaagacatgatacaaaagaaataaaacatact 23803864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 23016418 - 23016319
Alignment:
Q  223 caacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactcta 322  Q
    |||||||||||||||| |  |  ||| | ||||||||||||| ||||||||||| ||||||||| ||| ||| |||  | ||||||||||  ||||||||    
T  23016418 caacaaataaatagaggtttaagttagaaccctaatcaaaaggtgtttagttacccatggtaacaaaatacataatcaaaaagaaataaaggatactcta 23016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 23007980 - 23008030
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  23007980 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 23008030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 9891197 - 9891249
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatact 319  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||| |||||    
T  9891197 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaatatact 9891249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 52998924 - 52998832
Alignment:
Q  232 aatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    ||||||||| |||| || |  |||||||||||| |||||||| |||||| ||||| ||| ||| |||| | ||||||||||||||||||||||    
T  52998924 aatagagattcatcatagaaacctaatcaaaaggtgtttagtcactcattgtaacaaaatacataatacaaaagaaataaaacatactctaag 52998832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 28572452 - 28572516
Alignment:
Q  260 aaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    ||||| |||||| |||||||||||||| ||||||| | || | ||||||||||||||||||||||    
T  28572452 aaaagctgtttaattactcatggtaactaaagacaaattacaaaagaaataaaacatactctaag 28572516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 12880466 - 12880527
Alignment:
Q  263 agttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    |||||||||||||||||||||||| ||| ||| | |||| |  |||||||||||||||||||    
T  12880466 agttgtttagttactcatggtaacaaaatacatattataaacaaaataaaacatactctaag 12880527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 17671426 - 17671459
Alignment:
Q  253 cctaatcaaaagttgtttagttactcatggtaac 286  Q
    ||||||||||||||||||||||||||||||||||    
T  17671426 cctaatcaaaagttgtttagttactcatggtaac 17671459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 18746419 - 18746354
Alignment:
Q  252 ccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacata 317  Q
    ||||| |||| || ||||||||||||||||||||| ||||||| | || | |||||||||||||||    
T  18746419 ccctactcaatagatgtttagttactcatggtaactaaagacaaattacagaagaaataaaacata 18746354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 324
Target Start/End: Complemental strand, 12216204 - 12216148
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    ||||||||||||||||||| ||||||  | || | ||||||||||||||||||||||    
T  12216204 tttagttactcatggtaactaaagacgaattacaaaagaaataaaacatactctaag 12216148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 5529336 - 5529386
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  5529336 tttagttactcatggtaactaaagacaaattaaaaaagaaataaaacatac 5529386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Complemental strand, 9264074 - 9264024
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  9264074 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 9264024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 18467767 - 18467840
Alignment:
Q  246 ttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatact 319  Q
    ||||| ||||||| || || |||||||||||||||| |||  |||||||  ||| | |||||||||||||||||    
T  18467767 ttatatccctaataaacaggtgtttagttactcatgataataaaagacatgatacaaaagaaataaaacatact 18467840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 318
Target Start/End: Complemental strand, 19547787 - 19547738
Alignment:
Q  269 ttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  19547787 ttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 19547738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 5750416 - 5750476
Alignment:
Q  224 aacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggta 284  Q
    ||||||||||||||| | ||||||| | | ||||||  ||| |||||||||||||||||||    
T  5750416 aacaaataaatagaggtacatcttagaactctaatcttaaggtgtttagttactcatggta 5750476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 8746935 - 8746839
Alignment:
Q  227 aaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    |||||||||||| |  |||||| | |||||||||||||| ||||| |||||||||||||  ||||| | | || | ||||||||||||||||||||||    
T  8746935 aaataaatagaggtttatcttagaaccctaatcaaaagt-gtttaattactcatggtaatcaaagataaattacaaaagaaataaaacatactctaag 8746839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 27910247 - 27910298
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  27910247 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 27910298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 13159379 - 13159469
Alignment:
Q  227 aaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacata 317  Q
    |||||||||||| | |||| |  | ||||||| ||||| ||||||||||||||||||||| ||| ||| |||    |||||||||||||||    
T  13159379 aaataaatagaggttcatcgttgaaccctaattaaaagatgtttagttactcatggtaacaaaatacataatcagaaagaaataaaacata 13159469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 15072980 - 15072915
Alignment:
Q  221 tccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaac 286  Q
    ||||| |||||||||||| | | ||||| | ||||||||||||| ||||| ||| |||||||||||    
T  15072980 tccaataaataaatagaggttcgtcttaaaaccctaatcaaaaggtgtttggttgctcatggtaac 15072915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 36977187 - 36977279
Alignment:
Q  231 aaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaag 324  Q
    |||||||| | |||| || | |||||||||| || ||||||||||| ||||||||| ||||||| | || | |||||||||||  |||||||||    
T  36977187 aaatagaggttcatcatagaaccctaatcaataggtgtttagttacgcatggtaactaaagacaaattaca-aagaaataaaatgtactctaag 36977279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 25784342 - 25784370
Alignment:
Q  42 taaattgtcatctaaaggaaccactttta 70  Q
    |||||||||||||||||||||||||||||    
T  25784342 taaattgtcatctaaaggaaccactttta 25784370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1668 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1668
Description:

Target: scaffold1668; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 681 - 585
Alignment:
Q  223 caacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatact 319  Q
    |||||||||||||||| |  ||| || | ||||||||||||| ||||||||||||||||||||| |||  || |||  | || ||||||||||||||    
T  681 caacaaataaatagaggttgatcatagaaccctaatcaaaaggtgtttagttactcatggtaacaaaatgcataatcaataacaaataaaacatact 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 16811143 - 16811206
Alignment:
Q  223 caacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaac 286  Q
    |||||||||||||||| ||||||||| |  |||||||||| | |||||| ||||||||||||||    
T  16811143 caacaaataaatagaggtccatcttagaagcctaatcaaacggtgtttaattactcatggtaac 16811206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 26253978 - 26253878
Alignment:
Q  224 aacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatactctaa 323  Q
    ||||||||||||||| | |||| |  | ||| ||||||||  | ||||||||||||||||||| | ||||| |||| | ||||||||||| ||||| |||    
T  26253978 aacaaataaatagaggttcatcctcgaacccaaatcaaaatatatttagttactcatggtaacaatagacaaaatacaaaagaaataaaatatactttaa 26253879  T
Q  324 g 324  Q
    |    
T  26253878 g 26253878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 23013787 - 23013736
Alignment:
Q  267 gtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  23013787 gtttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 23013736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 13692972 - 13693022
Alignment:
Q  268 tttagttactcatggtaacgaaagacacaatatacaagaaataaaacatac 318  Q
    ||||||||||||||||||| ||||||| | || | ||||||||||||||||    
T  13692972 tttagttactcatggtaactaaagacaaattacaaaagaaataaaacatac 13693022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 319
Target Start/End: Original strand, 17043891 - 17043988
Alignment:
Q  221 tccaacaaataaatagagatccatcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacatact 319  Q
    |||||||||||||||||||| ||| ||| | ||  | |||| ||||||||||||||| |||||||| ||| | | |||| | || ||||||||||||||    
T  17043891 tccaacaaataaatagagattcattttagaaccacagtcaatagttgtttagttact-atggtaacaaaataaataataaaaaataaataaaacatact 17043988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 24322168 - 24322094
Alignment:
Q  243 atcttatagccctaatcaaaagttgtttagttactcatggtaacgaaagacacaatatacaagaaataaaacata 317  Q
    ||||||||  ||||||||| || |||||| |||||||||||||| ||||| | ||||||  ||||||||||||||    
T  24322168 atcttataaacctaatcaataggtgtttaattactcatggtaacaaaagatataatataatagaaataaaacata 24322094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 11005120 - 11005079
Alignment:
Q  42 taaattgtcatctaaaggaaccacttttatatatgaatctta 83  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  11005120 taaagtgtcatctaaaggaaccacttttacctatgaatctta 11005079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 24322478 - 24322437
Alignment:
Q  42 taaattgtcatctaaaggaaccacttttatatatgaatctta 83  Q
    |||||||||||||||| ||||||||||||| |||||| ||||    
T  24322478 taaattgtcatctaaatgaaccacttttatctatgaaactta 24322437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University