View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14233_low_10 (Length: 227)

Name: NF14233_low_10
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14233_low_10
NF14233_low_10
[»] chr6 (2 HSPs)
chr6 (11-227)||(24254118-24254334)
chr6 (35-67)||(6942804-6942836)
[»] chr7 (3 HSPs)
chr7 (34-226)||(19325675-19325867)
chr7 (108-195)||(12819673-12819760)
chr7 (108-175)||(19645433-19645500)
[»] chr5 (5 HSPs)
chr5 (108-212)||(29642609-29642713)
chr5 (108-227)||(29820893-29821012)
chr5 (108-212)||(29593922-29594027)
chr5 (108-189)||(29597298-29597378)
chr5 (39-87)||(29821033-29821081)
[»] chr4 (1 HSPs)
chr4 (103-164)||(53790816-53790877)
[»] chr8 (1 HSPs)
chr8 (108-175)||(27618720-27618787)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 24254334 - 24254118
Alignment:
Q  11 taatactggtttctcgatatcagaaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaataaaataccatggaaattcgtcaa 110  Q
    |||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  24254334 taatactgatttctcaatatcacaaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaatgaaataccatggaaattcttcaa 24254235  T
Q  111 ggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttgtaa 210  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  24254234 ggattacgttgaaagtttggcttcaatttgttgaaaataagtttctttatgatgatttacttgttctaatttgtttggattcatgcgtgttgttttgaaa 24254135  T
Q  211 tctttttcattccatag 227  Q
    ||||| |||||||||||    
T  24254134 tctttgtcattccatag 24254118  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 6942836 - 6942804
Alignment:
Q  35 aagcaattctctatcatttgaaagataatagag 67  Q
    |||||||||||||| ||||||||||||||||||    
T  6942836 aagcaattctctataatttgaaagataatagag 6942804  T

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Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 19325867 - 19325675
Alignment:
Q  34 aaagcaattctctatcatttgaaagataatagagtagagcaggctagtggtaataaaataccatggaaattcgtcaaggattacgttgaaagtttggctt 133  Q
    |||||||| || ||||||||||||||||||||||||||||  |||||| ||||| ||||| ||||||  |||| ||||||||| ||||||||||||||||    
T  19325867 aaagcaatactatatcatttgaaagataatagagtagagctagctagtagtaatgaaataacatggagtttcgccaaggattatgttgaaagtttggctt 19325768  T
Q  134 caatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttgtaatctttttcattccata 226  Q
    |||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| || ||||||||||    
T  19325767 caatttgttgaaagtaagtttctttatgatgatttacttgttccaatttgtttgaattcatgcgggttgttttgaaatccttgtcattccata 19325675  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 195
Target Start/End: Complemental strand, 12819760 - 12819673
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatg 195  Q
    ||||||||| |||||||||||||||||||||| ||| || | |||||||  ||| |||||||||||||  ||||| ||||||||||||    
T  12819760 caaggattatgttgaaagtttggcttcaatttgttgaaactgagtttctacatgttgatttacttgtttgaatttatttgaattcatg 12819673  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 19645500 - 19645433
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgtt 175  Q
    ||||||||| ||||||||||||| ||||| || ||| |||||||||||||||| ||||||||||||||    
T  19645500 caaggattatgttgaaagtttggtttcaacttgttgaaagtaagtttctttattatgatttacttgtt 19645433  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 29642609 - 29642713
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttg 207  Q
    ||||||||| ||||||||||||||||  |||| ||| |||||||||||||||  ||||||||||||||| ||||| ||||||||||||  |||| |||||    
T  29642609 caaggattatgttgaaagtttggcttggatttgttgaaagtaagtttctttacaatgatttacttgttcaaatttatttgaattcatgtatgttattttg 29642708  T
Q  208 taatc 212  Q
     ||||    
T  29642709 aaatc 29642713  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 227
Target Start/End: Complemental strand, 29821012 - 29820893
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaattcatgcgtgttgttttg 207  Q
    ||||||||| ||||||||||| ||||  |||| ||| |||||||||||||||  ||||||||||||||| ||||| ||||||||||||  |||| |||||    
T  29821012 caaggattatgttgaaagtttagcttggatttgttgaaagtaagtttctttacaatgatttacttgttcgaatttatttgaattcatgtatgttattttg 29820913  T
Q  208 taatctttttcattccatag 227  Q
     ||||| | ||||| |||||    
T  29820912 aaatctatatcatttcatag 29820893  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 29594027 - 29593922
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgat-gatttacttgttctaatttgtttgaattcatgcgtgttgtttt 206  Q
    |||||||||  |||||||||||||||| |||||||| |||||||||||||||  || ||||||| ||||| ||||| ||  ||||||||| |||| ||||    
T  29594027 caaggattattttgaaagtttggcttcgatttcttgaaagtaagtttctttacaatggatttacctgttcaaatttattcaaattcatgcatgttatttt 29593928  T
Q  207 gtaatc 212  Q
    | ||||    
T  29593927 ggaatc 29593922  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 29597378 - 29597298
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgttctaatttgtttgaa 189  Q
    ||||||||| ||||||||||||||||| |||| ||| ||||||| |||||||  ||||||||||||||| ||||| ||||||    
T  29597378 caaggattatgttgaaagtttggcttcgatttgttgaaagtaag-ttctttagaatgatttacttgttcgaatttatttgaa 29597298  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 29821081 - 29821033
Alignment:
Q  39 aattctctatcatttgaaagataatagagtagagcaggctagtggtaat 87  Q
    |||||||||| |||||||| ||||||||||| |||| |||| |||||||    
T  29821081 aattctctatgatttgaaaaataatagagtaaagcaagctattggtaat 29821033  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 53790816 - 53790877
Alignment:
Q  103 ttcgtcaaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatg 164  Q
    |||| ||||||||| |||||||||||||||||||||  ||| ||| ||||| ||||||||||    
T  53790816 ttcgccaaggattatgttgaaagtttggcttcaattcgttgaaaggaagttcctttatgatg 53790877  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 27618720 - 27618787
Alignment:
Q  108 caaggattacgttgaaagtttggcttcaatttcttgtaagtaagtttctttatgatgatttacttgtt 175  Q
    ||||||||| |||||||| |||| |||||||||||| ||||||||| || | ||| || |||||||||    
T  27618720 caaggattatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtt 27618787  T

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