View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14233_low_11 (Length: 221)

Name: NF14233_low_11
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14233_low_11
NF14233_low_11
[»] chr4 (7 HSPs)
chr4 (106-221)||(7540257-7540372)
chr4 (130-221)||(14612305-14612396)
chr4 (110-165)||(14612139-14612194)
chr4 (110-165)||(47645664-47645719)
chr4 (106-155)||(47645437-47645486)
chr4 (174-221)||(32335914-32335961)
chr4 (177-221)||(47645509-47645553)
[»] chr5 (8 HSPs)
chr5 (106-196)||(18739932-18740022)
chr5 (174-221)||(20732698-20732745)
chr5 (110-165)||(3023746-3023801)
chr5 (176-221)||(18739807-18739852)
chr5 (110-221)||(16287511-16287623)
chr5 (174-213)||(38322290-38322329)
chr5 (174-221)||(38545444-38545491)
chr5 (175-216)||(26214094-26214135)
[»] chr7 (7 HSPs)
chr7 (110-221)||(38722971-38723082)
chr7 (174-221)||(9154466-9154513)
chr7 (120-165)||(38722815-38722860)
chr7 (105-221)||(45782190-45782307)
chr7 (110-165)||(35533644-35533698)
chr7 (110-155)||(9154300-9154345)
chr7 (110-155)||(45782024-45782069)
[»] chr2 (10 HSPs)
chr2 (105-165)||(11919894-11919954)
chr2 (105-221)||(22699015-22699131)
chr2 (110-165)||(25547801-25547856)
chr2 (105-155)||(9775386-9775436)
chr2 (110-156)||(35844946-35844992)
chr2 (174-221)||(11919736-11919783)
chr2 (106-146)||(35935596-35935636)
chr2 (110-221)||(35935371-35935482)
chr2 (97-155)||(22698835-22698893)
chr2 (105-218)||(28319176-28319289)
[»] chr1 (4 HSPs)
chr1 (105-221)||(18106876-18106992)
chr1 (116-160)||(4849967-4850011)
chr1 (174-221)||(23279761-23279808)
chr1 (109-154)||(24749754-24749798)
[»] scaffold0005 (2 HSPs)
scaffold0005 (130-221)||(204981-205072)
scaffold0005 (110-165)||(205183-205238)
[»] chr3 (4 HSPs)
chr3 (110-221)||(24312832-24312943)
chr3 (111-165)||(48743134-48743188)
chr3 (133-214)||(48743308-48743389)
chr3 (104-207)||(1265839-1265942)
[»] scaffold0064 (1 HSPs)
scaffold0064 (131-221)||(54417-54507)
[»] chr8 (5 HSPs)
chr8 (106-156)||(32731469-32731519)
chr8 (106-155)||(132611-132659)
chr8 (110-155)||(30199620-30199665)
chr8 (180-221)||(8137609-8137650)
chr8 (177-221)||(32731372-32731416)
[»] scaffold0173 (1 HSPs)
scaffold0173 (110-216)||(22812-22918)
[»] scaffold0084 (1 HSPs)
scaffold0084 (104-165)||(4513-4574)
[»] chr6 (5 HSPs)
chr6 (174-218)||(19176467-19176511)
chr6 (110-165)||(9362745-9362800)
chr6 (174-221)||(13118482-13118529)
chr6 (102-155)||(655521-655574)
chr6 (110-155)||(17144265-17144310)
[»] scaffold0010 (1 HSPs)
scaffold0010 (110-155)||(128354-128399)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 7540372 - 7540257
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgttt 205  Q
    ||||||||||||| |||||| || ||||||||||||| ||||||||||||||||||||||        | |||||||||||||| |||||||||||||||    
T  7540372 aggtttaaatgcacttttggccccctatgtttgccgttgtagcaattttgatcctctaacaaaaaaaatacaattttgaccccctatttttgccatgttt 7540273  T
Q  206 agggaaatatgctctt 221  Q
    ||||||||||||||||    
T  7540272 agggaaatatgctctt 7540257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 14612396 - 14612305
Alignment:
Q  130 ctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    ||||||||| | |||||||||||||| ||| |||||        |||||||||||||||| | |||||||||||||||||||||||||||||    
T  14612396 ctatgtttgtcatcgtagcaattttggtcccctaacaaaaaaaatgcaattttgaccccctaattttgccatgtttagggaaatatgctctt 14612305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 14612139 - 14612194
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  14612139 ttaaatgcacttttggtcctctatgtttgtcgtcgtagcaattttgaccccctaac 14612194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 47645719 - 47645664
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||    
T  47645719 ttaaatgcattttttgtcctttatgtttgccttcgtagcaattttgatcccctaac 47645664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 47645437 - 47645486
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||||||| | ||||||||| ||||||||||| ||||||||||||||    
T  47645437 aggtttaaatgtacttttggtcccctatgtttgccatcgtagcaattttg 47645486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 32335914 - 32335961
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||    
T  32335914 tgcaattttgaccccttaattttgccatgtttagggatatatgctctt 32335961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 47645509 - 47645553
Alignment:
Q  177 aattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    ||| ||||||||| | |||||||||||||||| ||||||||||||    
T  47645509 aatattgaccccctaattttgccatgtttaggaaaatatgctctt 47645553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 18740022 - 18739932
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgattttt 196  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||        |||||||||||||||||| ||||    
T  18740022 aggtttaaatgcatttttggtcctctatgtttgccgttgtagcaattttgaccctctaacaaaaacaatgcaattttgacccccgaatttt 18739932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 20732745 - 20732698
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||    
T  20732745 tgcaattttgaccccctaattttgccatgtttagggaaatatgctctt 20732698  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 3023801 - 3023746
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||| || |||||    
T  3023801 ttaaatgcatttttggccctttatgtttgtcgtcgtagcaattttgaccccctaac 3023746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 18739807 - 18739852
Alignment:
Q  176 caattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||  | |||||||||||||||||||||||||||||    
T  18739807 caattttgaccccttaattttgccatgtttagggaaatatgctctt 18739852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 16287511 - 16287623
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnn-tgcaattttgacccccgatttttgccatgtttagg 208  Q
    |||||||||||||||  |  |||||||||||||||||||||||||   || |||||         |||||||||||||||| | |||||||||||||||     
T  16287511 ttaaatgcatttttgacctcctatgtttgccgtcgtagcaattttagccccctaacaaaaaaaaatgcaattttgaccccctaattttgccatgtttaga 16287610  T
Q  209 gaaatatgctctt 221  Q
     ||||||||||||    
T  16287611 aaaatatgctctt 16287623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 38322290 - 38322329
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaat 213  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  38322290 tgcaattttgaccccctaattttgccatgtttagggaaat 38322329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 38545491 - 38545444
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||  | |||||||||||||||||| ||||||||||    
T  38545491 tgcaattttgaccccttaattttgccatgtttagggatatatgctctt 38545444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 26214094 - 26214135
Alignment:
Q  175 gcaattttgacccccgatttttgccatgtttagggaaatatg 216  Q
    ||||||||||||||| ||||||| |||||||||| |||||||    
T  26214094 gcaattttgaccccctatttttgtcatgtttaggtaaatatg 26214135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 38723082 - 38722971
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttaggg 209  Q
    ||||||||| |||||| || ||||||||||| |||||||| |||||  || |||||        |||||||||||||||| | |||||||||||||||||    
T  38723082 ttaaatgcacttttggacccctatgtttgccatcgtagcagttttggccccctaacaaaaaaaatgcaattttgaccccctaattttgccatgtttaggg 38722983  T
Q  210 aaatatgctctt 221  Q
    ||||||||||||    
T  38722982 aaatatgctctt 38722971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 9154513 - 9154466
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  9154513 tgcaattttggccccctatttttgccatgtttagagaaatatgctctt 9154466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 38722815 - 38722860
Alignment:
Q  120 ttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    |||||||||||||||||| |||||||||||||||||| || |||||    
T  38722815 ttttggtcctctatgttttccgtcgtagcaattttgaccccctaac 38722860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 45782307 - 45782190
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgt- 203  Q
    |||||||||||||| ||||||||||||||||||||    |||| |||||||  || |||||        |||||||||||||||  | |||||||||||     
T  45782307 taggtttaaatgcacttttggtcctctatgtttgctactgtagtaattttgcccccctaacaaaagaaatgcaattttgaccccttaattttgccatgtg 45782208  T
Q  204 ttagggaaatatgctctt 221  Q
    ||||| ||||||||||||    
T  45782207 ttaggaaaatatgctctt 45782190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 35533698 - 35533644
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    |||||||||||||||| || |||||||| |||||||||||||||||| || |||||    
T  35533698 ttaaatgcatttttggccc-ctatgttttccgtcgtagcaattttgaccccctaac 35533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 9154300 - 9154345
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||||| |||||  |||||||||||||| ||||||||||||||    
T  9154300 ttaaatgcacttttgaccctctatgtttgccatcgtagcaattttg 9154345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 45782024 - 45782069
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||||| ||||||||| |||||||||||  |||||||||||||    
T  45782024 ttaaatgcacttttggtcccctatgtttgccaccgtagcaattttg 45782069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 11919954 - 11919894
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||    
T  11919954 taggtttaaatgcatttttggtcttctatgtttgccgtcgtagcaattctgaccccctaac 11919894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 22699131 - 22699015
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtt 204  Q
    |||| ||||||||| |||||  || |||||||||||||||||||||||||||  | |||||        ||||||||| |||||| | ||||| ||||||    
T  22699131 taggcttaaatgcacttttgaccccctatgtttgccgtcgtagcaattttgactccctaacaaaaaaaatgcaattttaaccccctaattttgtcatgtt 22699032  T
Q  205 tagggaaatatgctctt 221  Q
    |||| ||||||||||||    
T  22699031 taggaaaatatgctctt 22699015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 25547801 - 25547856
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||||    
T  25547801 ttaaatgcacttttgatcctctatgtttgccgtcgtagcaattttgaccccctaac 25547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 9775386 - 9775436
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||||||    
T  9775386 taggcttaaatgcatttttgatcccctatgtttgccgtcgtagcaattttg 9775436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 35844992 - 35844946
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttga 156  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||    
T  35844992 ttaaatgcatttttggccctctatgtttgccttcgtagcaattttga 35844946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 11919736 - 11919783
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||    
T  11919736 tgcaattttgaccccctaattttgccatgtttaggaaaatatgctctt 11919783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 35935636 - 35935596
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgta 146  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  35935636 aggtttaaatgcatttttgatcccctatgtttgccgtcgta 35935596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 35935371 - 35935482
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttaggg 209  Q
    ||||||||| |||||| || |||| |||||||||||||||||||||  || |||||        ||||||||  |||||| | ||||| ||||||| ||     
T  35935371 ttaaatgcacttttggccccctatatttgccgtcgtagcaattttggccccctaacaaaaaaaatgcaatttaaaccccctaattttgtcatgtttcgga 35935470  T
Q  210 aaatatgctctt 221  Q
    ||||||||||||    
T  35935471 aaatatgctctt 35935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 22698835 - 22698893
Alignment:
Q  97 atacttcttaggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    |||||| || || |||||| ||||||||  || ||||||||||||||||||||||||||    
T  22698835 atacttttttggcttaaatacatttttgaccccctatgtttgccgtcgtagcaattttg 22698893  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 28319289 - 28319176
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtt 204  Q
    |||| ||||||||| |||||  |  ||||||||||   ||||||||||||| ||| |||||        |||||||||||||| | |  |||||||||||    
T  28319289 taggcttaaatgcacttttgacctcctatgtttgcaaccgtagcaattttggtcccctaacaaaaaaaatgcaattttgaccctctaagtttgccatgtt 28319190  T
Q  205 tagggaaatatgct 218  Q
    ||||||||||||||    
T  28319189 tagggaaatatgct 28319176  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 18106992 - 18106876
Alignment:
Q  105 taggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtt 204  Q
    |||||||||||||| |||||     |||| |||| ||| |||| |||||||||||||||||         ||||||||||||||| ||||||||||||||    
T  18106992 taggtttaaatgcacttttgacttcctatatttgtcgttgtagtaattttgatcctctaacaaaaaaaaagcaattttgaccccctatttttgccatgtt 18106893  T
Q  205 tagggaaatatgctctt 221  Q
    |||||||||||||||||    
T  18106892 tagggaaatatgctctt 18106876  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 4850011 - 4849967
Alignment:
Q  116 gcatttttggtcctctatgtttgccgtcgtagcaattttgatcct 160  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  4850011 gcatttttggtcttctatgtttgccgtcgtaacaattttgatcct 4849967  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 23279808 - 23279761
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||  | |||||||||||||||| ||||||||||||    
T  23279808 tgcaattttgaccccttaattttgccatgtttaggaaaatatgctctt 23279761  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 24749798 - 24749754
Alignment:
Q  109 tttaaatgcatttttggtcctctatgtttgccgtcgtagcaatttt 154  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||    
T  24749798 tttaaatgcacttttggtcc-ctatgtttgccatcgtagcaatttt 24749754  T

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Target: scaffold0005 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 204981 - 205072
Alignment:
Q  130 ctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    ||||||||| | |||||||||||||| ||| |||||        |||||||||||||||| | |||||||||||||||||||||||||||||    
T  204981 ctatgtttgtcatcgtagcaattttggtcccctaacaaaaaaaatgcaattttgaccccctaattttgccatgtttagggaaatatgctctt 205072  T

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Target: scaffold0005; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 205238 - 205183
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||| || |||||    
T  205238 ttaaatgcacttttggtcctctatgtttgtcgtcgtagcaattttgaccccctaac 205183  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 24312943 - 24312832
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttaggg 209  Q
    |||||||||||||| | || ||||||||| ||||||||||||||||  || |||||        |||||||||||||||  | ||||||||||||||||     
T  24312943 ttaaatgcattttttgccccctatgtttgtcgtcgtagcaattttggccccctaacaaaaacaatgcaattttgaccccttaattttgccatgtttagga 24312844  T
Q  210 aaatatgctctt 221  Q
    ||||||||||||    
T  24312843 aaatatgctctt 24312832  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 48743134 - 48743188
Alignment:
Q  111 taaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    |||||||| |||||| || |||||||||||||||||||||||||| ||| |||||    
T  48743134 taaatgcacttttggccccctatgtttgccgtcgtagcaattttggtccactaac 48743188  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 48743389 - 48743308
Alignment:
Q  133 tgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttagggaaata 214  Q
    ||||||||| |||||||||||||  || |||||        |||||||||||||||| | ||||||||||||||||||||||    
T  48743389 tgtttgccgccgtagcaattttggccccctaacaaaaaaaatgcaattttgaccccctaattttgccatgtttagggaaata 48743308  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 1265839 - 1265942
Alignment:
Q  104 ttaggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgt 203  Q
    ||||| |||||||||||||||   |||||||||| |||| ||||||||||| | ||||||||        || ||||||||||||  ||||||| |||||    
T  1265839 ttaggcttaaatgcatttttgcctctctatgtttaccgttgtagcaattttaaccctctaacaaaaaaattgtaattttgaccccttatttttgtcatgt 1265938  T
Q  204 ttag 207  Q
    ||||    
T  1265939 ttag 1265942  T

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Target: scaffold0064 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 54417 - 54507
Alignment:
Q  131 tatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnntgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||| ||||||||| ||||||||||||||||        ||||||||| |||||| | ||||||| |||||||||||||||||||||    
T  54417 tatgtttgtcgtcgtagccattttgatcctctaacaaaaaaaatgcaatttttaccccctaattttgccttgtttagggaaatatgctctt 54507  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 32731519 - 32731469
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttga 156  Q
    |||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  32731519 aggtttaaatgcatttttggtcctttatgtttgtcgtcgtagaaattttga 32731469  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 132659 - 132611
Alignment:
Q  106 aggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||    
T  132659 aggtttaaatgcatttttgaccc-ctatgtttgccgtcgtagcaattttg 132611  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 30199665 - 30199620
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  30199665 ttaaatgcacttttgatcctttatgtttgccgtcgtagcaattttg 30199620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 8137609 - 8137650
Alignment:
Q  180 tttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||  |||||||||| ||||||||||||||||||||    
T  8137609 tttgaccccatatttttgccacgtttagggaaatatgctctt 8137650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 32731372 - 32731416
Alignment:
Q  177 aattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    ||||||||||||| | |||| ||||||||||| ||||||||||||    
T  32731372 aattttgaccccctaatttttccatgtttaggaaaatatgctctt 32731416  T

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Target: scaffold0173 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 22812 - 22918
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaacnnnnnnnn-tgcaattttgacccccgatttttgccatgtttagg 208  Q
    ||||||||| |||||| ||  |||||||||| ||||||||||||||| || |||||         |||||||||||||||| ||||||||||||||||||    
T  22812 ttaaatgcacttttggccccttatgtttgccatcgtagcaattttgaccc-ctaacaaaacaaaatgcaattttgaccccctatttttgccatgtttagg 22910  T
Q  209 gaaatatg 216  Q
     |||||||    
T  22911 taaatatg 22918  T

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Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 165
Target Start/End: Original strand, 4513 - 4574
Alignment:
Q  104 ttaggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||| ||||||||| ||||||  | ||||||||||||||||||||||||||| || |||||    
T  4513 ttaggcttaaatgcacttttggctcgctatgtttgccgtcgtagcaattttgaccccctaac 4574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 19176467 - 19176511
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgct 218  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  19176467 tgcaattttgaccccataattttgccatgtttagggaaatatgct 19176511  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 9362745 - 9362800
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttgatcctctaac 165  Q
    ||||||||| |||||| || |||||||||||| ||||||||||||| ||| |||||    
T  9362745 ttaaatgcacttttggcccactatgtttgccgccgtagcaattttggtcccctaac 9362800  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 13118482 - 13118529
Alignment:
Q  174 tgcaattttgacccccgatttttgccatgtttagggaaatatgctctt 221  Q
    |||||||||||||||  |||||| | ||||||||||||||||||||||    
T  13118482 tgcaattttgaccccttattttttcaatgtttagggaaatatgctctt 13118529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 655521 - 655574
Alignment:
Q  102 tcttaggtttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||| ||||||||| |||||| || ||||||||||| | ||||||||||||    
T  655521 tcttaggcttaaatgcacttttggccccctatgtttgccatggtagcaattttg 655574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 17144310 - 17144265
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||| |||||||||||||||||| ||| || ||||||||||||||    
T  17144310 ttaaacgcatttttggtcctctatattttccatcgtagcaattttg 17144265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 128354 - 128399
Alignment:
Q  110 ttaaatgcatttttggtcctctatgtttgccgtcgtagcaattttg 155  Q
    ||||||||| |||||| || ||||||||||||||||| ||||||||    
T  128354 ttaaatgcacttttggccccctatgtttgccgtcgtatcaattttg 128399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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