View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14233_low_3 (Length: 392)
Name: NF14233_low_3
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14233_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 45894158 - 45893795
Alignment:
| Q |
12 |
acagacagtgagtgacaaaaatgaccaacactttctcccagttaacacaacagtacaaagcactattaaagaaaaacatattaatctcgtgtcgaagcaa |
111 |
Q |
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| T |
45894158 |
acagacagtgagtgacaaaaatgaccaacactttctcccagttaatacaacagtacaaagcactattaaagaaaaacatattaatctcgtgtcgaagcaa |
45894059 |
T |
|
| Q |
112 |
gacatctatccttctccagatgctctcaccggtcatattcattttcctaatattcgccatagacaaagcaatcgaagtacaaacctcaacaactacgcag |
211 |
Q |
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| T |
45894058 |
gacatctatccttctccagatgctctcaccggtcatattcattttcctaatatccgccatagacaaagcaatcgaagtacaaacctcaacaactacgcag |
45893959 |
T |
|
| Q |
212 |
tataagtccacaacacatccttcgccaaaaccttcaccaccaatcccaccttgtgaaaacaaattctttgttaaagagccttgctatgattttatctgga |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45893958 |
tataagtccacaatacatccttcgccaaaaccttcaccaccaatcccaccttgtgaaaacaaattctttgttaaagagccttgctatgattttatctgga |
45893859 |
T |
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| Q |
312 |
gcggtgatactaacccaaagtttcacaccatcgtggagcgtatcatgaataataaccctggtag |
375 |
Q |
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| T |
45893858 |
gcggtgatactaacccaaagtttcacaccatcgtggagcgtatcatgaataataaccctggtag |
45893795 |
T |
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