View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14233_low_5 (Length: 328)

Name: NF14233_low_5
Description: NF14233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14233_low_5
NF14233_low_5
[»] chr6 (2 HSPs)
chr6 (93-194)||(21264342-21264443)
chr6 (224-260)||(21264267-21264303)
[»] chr7 (5 HSPs)
chr7 (134-306)||(883749-883924)
chr7 (134-306)||(1243078-1243253)
chr7 (99-194)||(19087385-19087483)
chr7 (124-178)||(21261914-21261968)
chr7 (134-182)||(44235372-44235420)
[»] chr8 (4 HSPs)
chr8 (100-160)||(10113039-10113099)
chr8 (263-306)||(13895983-13896026)
chr8 (207-251)||(12525139-12525183)
chr8 (206-250)||(12367509-12367553)
[»] scaffold0040 (1 HSPs)
scaffold0040 (94-303)||(49753-49965)
[»] chr4 (6 HSPs)
chr4 (145-303)||(52831466-52831623)
chr4 (207-303)||(24418208-24418304)
chr4 (214-257)||(20435490-20435533)
chr4 (207-285)||(20988783-20988861)
chr4 (206-311)||(31736111-31736215)
chr4 (263-303)||(24474113-24474153)
[»] chr3 (4 HSPs)
chr3 (206-258)||(13799990-13800042)
chr3 (101-179)||(9198039-9198117)
chr3 (206-303)||(43822539-43822643)
chr3 (206-254)||(32582514-32582562)
[»] chr1 (5 HSPs)
chr1 (206-306)||(31117697-31117797)
chr1 (206-258)||(21516607-21516660)
chr1 (207-303)||(32359193-32359289)
chr1 (211-254)||(20791924-20791967)
chr1 (123-180)||(1714052-1714109)
[»] chr2 (2 HSPs)
chr2 (224-306)||(40909921-40910003)
chr2 (263-303)||(12238601-12238641)
[»] chr5 (2 HSPs)
chr5 (206-303)||(9004832-9004930)
chr5 (206-250)||(32882792-32882836)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 21264443 - 21264342
Alignment:
Q  93 gatagtgaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 192  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21264443 gatagtgaataagttagttgattgattctctagtgtttgacaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatgcatttaatta 21264344  T
Q  193 at 194  Q
    ||    
T  21264343 at 21264342  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 21264267 - 21264303
Alignment:
Q  224 taaaattgaaataaaaagtgacaagctataaacttat 260  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21264267 taaaattaaaataaaaagtgacaagctataaacttat 21264303  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 883924 - 883749
Alignment:
Q  134 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaat-tttannnnnnncaattaagattgtagggttaaaatt 230  Q
    |||||||| |||||| |||| |||||||||| ||||||| |||||||||  |||||||||| | ||||       |||||| ||||| |||| ||||||     
T  883924 aaaattaacggttgaagtagcttataaatatgaaatgacataaaaaatgtgcatttaattagtatttatttttttcaattaggattgcaggggtaaaatg 883825  T
Q  231 gaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 306  Q
    || ||||||||||| || |||||||||  |  ||||||||||||| ||||| |||||  |||||||||||||||||    
T  883824 gagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagtta 883749  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 134 - 306
Target Start/End: Complemental strand, 1243253 - 1243078
Alignment:
Q  134 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaat-tttannnnnnncaattaagattgtagggttaaaatt 230  Q
    |||||||| |||||| |||| |||||||||| ||||||| |||||||||  |||||||||| | ||||       |||||| ||||| |||| ||||||     
T  1243253 aaaattaacggttgaagtagcttataaatatgaaatgacataaaaaatgtgcatttaattagtatttatttttttcaattaggattgcaggggtaaaatg 1243154  T
Q  231 gaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 306  Q
    || ||||||||||| || |||||||||  |  ||||||||||||| ||||| |||||  |||||||||||||||||    
T  1243153 gagataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagtta 1243078  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 19087483 - 19087385
Alignment:
Q  99 gaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa---tgcatttaattaat 194  Q
    ||||||||||  ||||||| | |||||||||||  |||||||| ||||||  || |||| |||||| ||||||| |||||||   ||||||||||||||    
T  19087483 gaataagttaaatgattgaatttatagtatttgataaaattaacggttgaattaatttaaaaatatgaaatgacataaaaaaatgtgcatttaattaat 19087385  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 21261968 - 21261914
Alignment:
Q  124 agtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaa 178  Q
    ||||||||| ||||||| | ||||| |||| | ||||||||||||||||||||||    
T  21261968 agtatttggtaaaattagttgttgaagtagctgataaatataaaatgacgtaaaa 21261914  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 44235372 - 44235420
Alignment:
Q  134 aaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaatg 182  Q
    |||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  44235372 aaaattagcggttgaagtagtttataaatatgaaatgacataaaaaatg 44235420  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 10113039 - 10113099
Alignment:
Q  100 aataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataa 160  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||  ||||||||||    
T  10113039 aataagttagttgattgattctatagtatttgataaaattagtggttgaactagtttataa 10113099  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 13895983 - 13896026
Alignment:
Q  263 aattaacttatcaaaaactgctataaactcatgaaaataagtta 306  Q
    ||||||||||||||||||  ||||||||||||||||||||||||    
T  13895983 aattaacttatcaaaaacaactataaactcatgaaaataagtta 13896026  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 12525139 - 12525183
Alignment:
Q  207 aattaagattgtagggttaaaattgaaataaaaagtgacaagcta 251  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||    
T  12525139 aattaagattgtaggggtaaaattgagataaaaagtgataagcta 12525183  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 12367553 - 12367509
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagct 250  Q
    ||||||| ||||||||| ||||||||| ||| |||||||||||||    
T  12367553 caattaaaattgtagggataaaattgagatataaagtgacaagct 12367509  T

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Target: scaffold0040 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 303
Target Start/End: Original strand, 49753 - 49965
Alignment:
Q  94 atagtgaataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaat--gcatttaatt 191  Q
    |||||| ||||  ||||||||||  | | |||||||||| ||||||| ||| |||  ||||| |||||||| ||||||| | ||||||  || |||||||    
T  49753 atagtggataaactagttgattggatttgtagtatttggtaaaattagtggctgacttagttgataaatatgaaatgacatgaaaaatttgcttttaatt 49852  T
Q  192 aat-tttannnnnnncaattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaac 290  Q
     || ||||       |||||||||||| | || ||||||||| ||||||||||| ||||||||| ||  |  ||||| ||||||| |||| ||||||| |    
T  49853 gatatttatttttttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataagctacttgaattagcttatcacaaaccgctataagc 49952  T
Q  291 tcatgaaaataag 303  Q
    || | ||||||||    
T  49953 tcttaaaaataag 49965  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 303
Target Start/End: Complemental strand, 52831623 - 52831466
Alignment:
Q  145 ttgatgtagtttataaatataaaatgacgtaaaaaatg--catttaattaattttannnnnnncaattaagattgtagggttaaaattgaaataaaaagt 242  Q
    |||| |||| |||||||||| ||||| | |||||||||  |||||||||||||||        |||||||||||| |||| | ||||||| ||||||| |    
T  52831623 ttgaagtagcttataaatatgaaatggcataaaaaatgtgcatttaattaatttt---ttttccaattaagattgcaggggtcaaattgagataaaaaat 52831527  T
Q  243 gacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    || ||||||||| ||  |  ||||| ||||||||||||   ||||| ||||||||||||||    
T  52831526 gataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataag 52831466  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 24418208 - 24418304
Alignment:
Q  207 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    ||||||||||| |||| ||||||  | ||||||| ||| ||||||||| ||  |  ||||| |||||||||||| ||||||| |||| |||||||||    
T  24418208 aattaagattgcaggggtaaaataaagataaaaaatgataagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataag 24418304  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 20435533 - 20435490
Alignment:
Q  214 attgtagggttaaaattgaaataaaaagtgacaagctataaact 257  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||    
T  20435533 attgtaggggtaaaattgagataaaaagtgacaagttataaact 20435490  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 20988783 - 20988861
Alignment:
Q  207 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgcta 285  Q
    ||||||||||  |||||||||||||| ||||||| ||| ||||||||| ||  |  ||||| ||||||||||| |||||    
T  20988783 aattaagattaaagggttaaaattgagataaaaaatgataagctataagctacttgaattagcttatcaaaaaatgcta 20988861  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 31736111 - 31736215
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtt 305  Q
    |||||||||||| ||||| |||||| | ||||||| | | ||||||||||||  |  ||||| ||||| |||||  | ||||| ||||||||||||||||    
T  31736111 caattaagattggagggt-aaaatttagataaaaaattataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagtt 31736209  T
Q  306 agaagt 311  Q
    | ||||    
T  31736210 ataagt 31736215  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 24474153 - 24474113
Alignment:
Q  263 aattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    ||||| ||||| |||||| ||||||||||||||||||||||    
T  24474153 aattagcttataaaaaaccgctataaactcatgaaaataag 24474113  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 13799990 - 13800042
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaactt 258  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||||||||||    
T  13799990 caattaagattgcaggggtaaaattgagataaaaagtgataagctataaactt 13800042  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 9198039 - 9198117
Alignment:
Q  101 ataagttagttgattgattctatagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaa 179  Q
    ||||||||||||||||| ||| |||| ||||| ||||||| | |||||  |||||| ||||||| ||||||| ||||||    
T  9198039 ataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgacataaaaa 9198117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 43822643 - 43822539
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaactt----atac---aattaacttatcaaaaactgctataaactcatgaaa 298  Q
    |||||| ||||| |||| |||||| || ||||||||||||||||||||| |||     |||   ||||| ||||||||||||  |||||| |||||||||    
T  43822643 caattaggattgcaggggtaaaatggagataaaaagtgacaagctataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaa 43822544  T
Q  299 ataag 303  Q
    |||||    
T  43822543 ataag 43822539  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 32582562 - 32582514
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataa 254  Q
    |||||||||||| | || ||||||||| ||||||||||| |||||||||    
T  32582562 caattaagattgcaagggtaaaattgagataaaaagtgataagctataa 32582514  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 31117697 - 31117797
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtt 305  Q
    ||||||||||||||||| ||||||||| ||||||| ||| | ||||||| ||  |  ||||| |||||||||||  ||||||| ||||| ||| ||||||    
T  31117697 caattaagattgtaggggtaaaattgagataaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagtt 31117796  T
Q  306 a 306  Q
    |    
T  31117797 a 31117797  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 21516607 - 21516660
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgac-aagctataaactt 258  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||||||    
T  21516607 caattaagattgtaggggtaaaattgagataagaagtgacaaagctataaactt 21516660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 303
Target Start/End: Complemental strand, 32359289 - 32359193
Alignment:
Q  207 aattaagattgtagggttaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    |||||||||||||||| ||||||||| ||||||||||  ||||||||   |  |  ||||| |||||||||||  ||| ||| ||||||||||||||    
T  32359289 aattaagattgtagggataaaattgagataaaaagtgctaagctataggttacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataag 32359193  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 20791924 - 20791967
Alignment:
Q  211 aagattgtagggttaaaattgaaataaaaagtgacaagctataa 254  Q
    |||||||||||| |||||| |||||||||||||||||| |||||    
T  20791924 aagattgtaggggtaaaatggaaataaaaagtgacaagttataa 20791967  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 1714052 - 1714109
Alignment:
Q  123 tagtatttggcaaaattaatggttgatgtagtttataaatataaaatgacgtaaaaaa 180  Q
    |||| ||||| ||||||||  ||||| ||||||||||||||| ||||||| |||||||    
T  1714052 tagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaaaaa 1714109  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 40910003 - 40909921
Alignment:
Q  224 taaaattgaaataaaaagtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataagtta 306  Q
    ||||||||| ||||||||||| || |||||||||  |  ||||| |||||||||||  | ||||| |||||||||||||||||    
T  40910003 taaaattgagataaaaagtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagtta 40909921  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 12238601 - 12238641
Alignment:
Q  263 aattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  12238601 aattagcttatcgaaaaccgctataaactcatgaaaataag 12238641  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 9004930 - 9004832
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaa-gtgacaagctataaacttatacaattaacttatcaaaaactgctataaactcatgaaaataag 303  Q
    |||||||||||| || | ||||||||| ||||||| ||||  |||||||| ||  |  ||||| |||||||||||| | ||||| ||||||||||||||    
T  9004930 caattaagattgcagaggtaaaattgagataaaaaagtgattagctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataag 9004832  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 32882836 - 32882792
Alignment:
Q  206 caattaagattgtagggttaaaattgaaataaaaagtgacaagct 250  Q
    |||||||||||| |||| ||||||||| ||||||||||| |||||    
T  32882836 caattaagattgcaggggtaaaattgagataaaaagtgagaagct 32882792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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