View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_14 (Length: 441)
Name: NF14234_high_14
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 3745221 - 3744808
Alignment:
| Q |
12 |
gaagaatatcaagaaaaagtgtgagaatggatttcaggttgatgggtttagatgctccagtgctacacgctttgcaccagatgatggatctttcagatga |
111 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||| ||||||||||| |
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| T |
3745221 |
gaagaaaatcaagaaaaagtgtgagaatggatttcaggttgatgggtttggatgctccagtgctacacgctcttcaccaaatgatggacctttcagatga |
3745122 |
T |
|
| Q |
112 |
caatgtggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcag |
211 |
Q |
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| T |
3745121 |
caatatggagaagacatcatcacacaatgctccaactagatcctatgttagagatgccaaggcaatggctgctactcctgcagatattaaggaagatcag |
3745022 |
T |
|
| Q |
212 |
aattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagagga |
311 |
Q |
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| T |
3745021 |
aattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagagga |
3744922 |
T |
|
| Q |
312 |
agagggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatac |
411 |
Q |
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| T |
3744921 |
agagggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgctaatac |
3744822 |
T |
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| Q |
412 |
tgatgctgtttctg |
425 |
Q |
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| T |
3744821 |
tgatgctgtttctg |
3744808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 215 - 406
Target Start/End: Complemental strand, 48303219 - 48303031
Alignment:
| Q |
215 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
314 |
Q |
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| T |
48303219 |
tcatacgtgttcgtggtggacatgccagggttgaaatctggtgacatcaaggttcaggttgaagatgagaatgtgcttctgataagcggtgaaaggaaga |
48303120 |
T |
|
| Q |
315 |
gggaagaagagaaagaaggtggtgcaaagtatttgagaatggaacgaagggttggtaagtttatgaggaaatttgtgcttcctgagaatgct |
406 |
Q |
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| T |
48303119 |
gagaagaagagaaagaaggtggt---aaatatttgaagatggaaagaagggttggtaagtttatgaggaaatttgtgttaccagagaatgct |
48303031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 10462162 - 10462270
Alignment:
| Q |
215 |
tcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataagcggagagaggaaga |
314 |
Q |
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|||| ||| |||| ||| ||| |||| |||||||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
10462162 |
tcattcgtattcgagatggacttgccgggattgaaatctggtgatatcaaggttgaggttgaagatgataaagtggttgtgataaccggcgagaggaaga |
10462261 |
T |
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| Q |
315 |
gggaagaag |
323 |
Q |
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| T |
10462262 |
gggaagaag |
10462270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 323
Target Start/End: Complemental strand, 10539977 - 10539854
Alignment:
| Q |
200 |
aaggaagatcagaattcatacgtgttcgtgattgacatgccaggattgaaatctggggatattaaggttcaggtggaagatgataacgtgcttgtgataa |
299 |
Q |
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|||||| |||| || || |||||||||| || || |||| ||| ||||||||| ||||| |||||| |||| ||||||||||| ||| ||||||||| |
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| T |
10539977 |
aaggaatatcaaaactcgtacgtgttcgagacagatatgctgggaatgaaatctgatgatatcaaggttgaggttgaagatgataatgtggttgtgataa |
10539878 |
T |
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| Q |
300 |
gcggagagaggaagagggaagaag |
323 |
Q |
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||| ||||||||||||||||||| |
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| T |
10539877 |
ccggcgagaggaagagggaagaag |
10539854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 357
Target Start/End: Complemental strand, 10543543 - 10543464
Alignment:
| Q |
278 |
gatgataacgtgcttgtgataagcggagagaggaagagggaagaagagaaagaaggtggtgcaaagtatttgagaatgga |
357 |
Q |
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||||| || ||| |||||||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||||| |
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| T |
10543543 |
gatgaaaatgtggttgtgataagtggagaaaggaagagggaagaagaagtagaagaaggtgttaagtatttgagaatgga |
10543464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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