View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_19 (Length: 393)

Name: NF14234_high_19
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_19
NF14234_high_19
[»] chr1 (3 HSPs)
chr1 (45-375)||(7561099-7561415)
chr1 (70-192)||(7555450-7555572)
chr1 (149-192)||(9581951-9581994)
[»] chr2 (1 HSPs)
chr2 (149-191)||(44575182-44575224)
[»] chr4 (3 HSPs)
chr4 (76-113)||(566758-566795)
chr4 (151-195)||(2525771-2525815)
chr4 (151-195)||(6007679-6007723)
[»] chr7 (1 HSPs)
chr7 (151-195)||(15091356-15091400)
[»] chr6 (1 HSPs)
chr6 (72-128)||(9412443-9412499)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 45 - 375
Target Start/End: Complemental strand, 7561415 - 7561099
Alignment:
Q  45 aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561415 aagaacaagaacaacaatttgtgctgctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgt 7561316  T
Q  145 tttgagtctctctccgtcgtctctaaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat 244  Q
    || ||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561315 ttagagtctct-------------aaacagtttctctctatcaccaacagtttctcgctatttatgcagtccacaaaagttgaatatatggactccatat 7561229  T
Q  245 nnnnnnnntcattatacgatattttgcgtcaaacgaaatcatcactatgcgtgcatgactaaggacggatttgttgtactttgtgcttttgtcctttaga 344  Q
            |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7561228 aaaaaaa-tcattatacgatattttgtgtcaaacgaaatcatcactgtgcgtgcatgactaaggacggatttgttgtactttgtgcttttgtcctttaga 7561130  T
Q  345 ttctaattagtattttgttatcattcgttgt 375  Q
    |||||||||||||||||||||||||||||||    
T  7561129 ttctaattagtattttgttatcattcgttgt 7561099  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 7555572 - 7555450
Alignment:
Q  70 gctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcgaggatgaccgctgttttgagtctctctccgtcgtctcta 169  Q
    |||| |||||||||||| ||||| |||||| ||| ||||||||| || |||||||| || || ||  |||| | |||  || |||||||| |||| || |    
T  7555572 gctgctttttatttacccgatgaatgttggcaacttgtcttcaaatttctcaacaacggtgacgacaaccgttatttgaagactctctccctcgtttcca 7555473  T
Q  170 aacagtttctctctatcaccaac 192  Q
    |||||||||||||||||||||||    
T  7555472 aacagtttctctctatcaccaac 7555450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 192
Target Start/End: Complemental strand, 9581994 - 9581951
Alignment:
Q  149 agtctctctccgtcgtctctaaacagtttctctctatcaccaac 192  Q
    ||||||| || |||||||| ||||||||||||||||||||||||    
T  9581994 agtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 44575182 - 44575224
Alignment:
Q  149 agtctctctccgtcgtctctaaacagtttctctctatcaccaa 191  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  44575182 agtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 566795 - 566758
Alignment:
Q  76 ttttatttacctgatgactgttggaaacatgtcttcaa 113  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  566795 ttttatttacctgatgactgttgggaacgtgtcttcaa 566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 2525815 - 2525771
Alignment:
Q  151 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 195  Q
    ||||||||| ||||||| ||||||||||| || ||||||||||||    
T  2525815 tctctctccctcgtctcaaaacagtttctgtccatcaccaacagt 2525771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 6007723 - 6007679
Alignment:
Q  151 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 195  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  6007723 tctctctccctcgtctcgaaacagttcctctccatcaccaacagt 6007679  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 15091356 - 15091400
Alignment:
Q  151 tctctctccgtcgtctctaaacagtttctctctatcaccaacagt 195  Q
    ||||||||| ||||||| |||||||| ||||| ||||||||||||    
T  15091356 tctctctccctcgtctccaaacagttcctctccatcaccaacagt 15091400  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 9412499 - 9412443
Alignment:
Q  72 tgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatgg 128  Q
    ||||||||||||||||||||| |||||| ||  | ||||||| ||||||||| ||||    
T  9412499 tgatttttatttacctgatgaatgttgggaaagtatcttcaaattcctcaacgatgg 9412443  T

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