View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_20 (Length: 388)
Name: NF14234_high_20
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 370
Target Start/End: Original strand, 9770273 - 9770640
Alignment:
| Q |
7 |
tgtagtagcataggcaagccaaacggtagaaaattgaccccagccaagtttcctctgagcaatataccttccaccggcgaattgatcagcgactctaaca |
106 |
Q |
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| T |
9770273 |
tgtagtatcataagcaagccaaacggtagaaaattgaccccaaccaagtttcctctgagcaatatacctcccaccggcgaattgatcagcgactctaaca |
9770372 |
T |
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| Q |
107 |
gcatggtatccacctttccgataggactcaaagccctcatcatcttcctccgatcctgacgaagaagaacacgacatgacccacttttttctttgatcag |
206 |
Q |
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| T |
9770373 |
gcatggtatccacctttccgataggactcaaagccctcatcatcttcctccgatcctgatgaagaagaacacgacatgacccacttttttctttgatcag |
9770472 |
T |
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| Q |
207 |
attcaccaacaaaacacaagacccagatggaaaaatcaaaactttattgattattttgaagttttgagaatcaccaatgaaatgggta----nnnnnnnn |
302 |
Q |
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| T |
9770473 |
attcaccaacaaaacacaagacccagatggaaaaatcaaaactttattgattattttgaagttttgagaatcaccaatgaaatgggtatttttaattatt |
9770572 |
T |
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| Q |
303 |
nnnnnnnngaaggaaattgcttggatgtgaagtattttgtttgtggtgtattatgagacactctctct |
370 |
Q |
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| T |
9770573 |
atttttttgaaggaaattgcttggatgtgaagtattttgtttgtggtgtattatgagacactctctct |
9770640 |
T |
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Back To:
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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 31020253 - 31020089
Alignment:
| Q |
20 |
gcaagccaaacggtagaaaattgaccccagccaagtttcctctgagcaatataccttccaccggcgaattgatcagcgactctaacagcatggtatccac |
119 |
Q |
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|||||||||||||| ||||| ||||||||||| | |||||||||||| ||||| |||||||||||||| |||||| |||| | || || || ||||||| |
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| T |
31020253 |
gcaagccaaacggtggaaaactgaccccagcccaatttcctctgagctatatatcttccaccggcgaactgatcaccgacccggacggcgtgatatccac |
31020154 |
T |
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| Q |
120 |
ctttccgataggactcaaagccctcatcatcttcctccgatcctgacgaagaagaacacgacatg |
184 |
Q |
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| T |
31020153 |
ctttccggtaggaatcaaagccttcatcatcatcttcagacccagatgaagaagaacaagacatg |
31020089 |
T |
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