View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_22 (Length: 371)
Name: NF14234_high_22
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_22 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 39539349 - 39539702
Alignment:
| Q |
18 |
ggaatcaagcatgtacctctctttgtaaagcctcgtcaagttcttgcttatcatctggtgttatgtctttagcatacaactgagttaagttattccttat |
117 |
Q |
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| T |
39539349 |
ggaatcaagcatgtacctctctttgtaaagcctcgtcaagttcttgcttatcatctggtgttatgtctttagcatacaactgagttaagttattccttat |
39539448 |
T |
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| Q |
118 |
cctgcacatgaagacatatgattactaacacaaagactaatccttggtgcagaaattgccacaattccataaatagtactgtataaattataatgacctg |
217 |
Q |
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| T |
39539449 |
cctgcacatgaagacatatgattactaacacaaagactaatccttggtgcagaaattgccacaattccataaatggtactgtataaattataatgacctg |
39539548 |
T |
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| Q |
218 |
taattacaggatattcattgattaagaatctaggccctgtttggataaacatcttattcttaattaagcccttatgcttataagcattcatcataagtgc |
317 |
Q |
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| T |
39539549 |
taattacaggacattcattgattaagcatctaggccctgtttggataaacatcttattcttaattaagcccttatgcttataagcattcatcataagtgc |
39539648 |
T |
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| Q |
318 |
ttattataaactactgttataactgtttatatataaactataaattgctttcat |
371 |
Q |
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| T |
39539649 |
ttattataaactactgttataactgtttatatataaactataaatttctttcat |
39539702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 7986344 - 7986594
Alignment:
| Q |
17 |
aggaatcaagcatgtacctctctttgtaaagcctcgtcaagttcttgcttatcatctggtgttatgtctttagcatacaactgagttaagttattcctta |
116 |
Q |
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| T |
7986344 |
aggaatcaagcatgtacctctctttgtaaagcctcatcaagttcttgcttatcgtctggtcttatgtctttagcata-----------agttattcctta |
7986432 |
T |
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| Q |
117 |
tcctgcacatgaagacatatgattactaacacaaagactaatccttggtgcagaaattgccacaattccataaatagtactgtataaattataatgacct |
216 |
Q |
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| T |
7986433 |
tcctgcacatgaagaca-atgattactaacacaaagactaatccttaatgcagaaattgccacaactccataaattgtactgtataaattgtaatgacct |
7986531 |
T |
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| Q |
217 |
gtaattacaggatattcattgattaagaatctaggccctgtttgga-taaacatcttattctta |
279 |
Q |
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| T |
7986532 |
gtaattacagaacatttattgattaagcatttaggtcatgtttggattaaaca-cttattctta |
7986594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 13206333 - 13206088
Alignment:
| Q |
17 |
aggaatcaagcatgtacctctctttgtaaagcctcgtcaagttcttgcttatcatctggtgttatgtctttagcatacaactgagttaagttattcctta |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| || |||||||||||| || |
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| T |
13206333 |
aggaatcaagcatgtacctctctttgtaaagcctcatcaagttcttgcttatcatttggtcttatgtctttagcatacaaatgcgttaagttattctata |
13206234 |
T |
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| Q |
117 |
tcctgcacatgaagacatatgattactaacacaaagactaatccttggtgcagaaattgccacaattccataaatagtactgtataaattataatgacct |
216 |
Q |
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| T |
13206233 |
tcctgcacatgaagaca-atgattactaacacaaagactaatccttagtgcagaaatagtgacaactccataaattgtactgtataaattgtaatgacct |
13206135 |
T |
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| Q |
217 |
gtaattacaggatattcattgattaagaatctaggccctgtttggat |
263 |
Q |
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| T |
13206134 |
gtaattacagaatatttattgattaagcatctaggtcatgtttggat |
13206088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 90 - 243
Target Start/End: Complemental strand, 12395937 - 12395785
Alignment:
| Q |
90 |
catacaactgagttaagttattccttatcctgcacatgaagacatatgattactaacacaaagactaatccttggtgcagaaattgccacaattccataa |
189 |
Q |
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||||||| || ||||| ||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
12395937 |
catacaaatgtgttaaattattccttatcctgcacatgaagaca-atgactactaacacaaacactaatccttagtgcagaaattgccacaactccataa |
12395839 |
T |
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| Q |
190 |
atagtactgtataaattataatgacctgtaattacaggatattcattgattaag |
243 |
Q |
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| T |
12395838 |
attgtactgtataaattgtaatgacctgtaattacaaaacatttattgattaag |
12395785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 23481111 - 23481168
Alignment:
| Q |
17 |
aggaatcaagcatgtacctctctttgtaaagcctcgtcaagttcttgcttatcatctg |
74 |
Q |
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| T |
23481111 |
aggaatcaagcatgtacctctctttgtaaagcctcatcaagttcttgcttataatctg |
23481168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 30910144 - 30910214
Alignment:
| Q |
32 |
acctctctttgtaaagcctcgtcaagttcttgcttatcatctggtgttatgtctttagcatacaactgagt |
102 |
Q |
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| T |
30910144 |
acctctctttgcaaagactcgtcaagttcctgcttatcatctggtgtaatatcttttgcatacaactgagt |
30910214 |
T |
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