View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_26 (Length: 332)
Name: NF14234_high_26
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 45062912 - 45063213
Alignment:
| Q |
15 |
gacattgacacatcttcgatcagaagtgttagtgtttcagattaatgtatgaaaaaggtgttttaattaatttacctgctttagtcatgccaatgccact |
114 |
Q |
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| T |
45062912 |
gacattgacacatctttgatcagaagtgttagtgtttcagattaatgtatgaaaaaggtgttttaattaatttacctgctttagtcatgccaatgccact |
45063011 |
T |
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| Q |
115 |
atcaatgattgatagtgttttgttagccttatcaggaacaagtctgatgaaaagctctggctgagcatcgagcttgctcttgtccgttaagctttcaaat |
214 |
Q |
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| T |
45063012 |
atcaatgattgatagtgttttgttagccttatcaggaacaagtctgatgaaaagctctggctgagcatcgagcttgctcttgtccgttaagctttcaaat |
45063111 |
T |
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| Q |
215 |
cgaattttatccaaagcctgtaatgnnnnnnnntcagaataaatctttctaaagtaatgtaatgcgaccaaaagaaatagaaaatgaagaataagaaaaa |
314 |
Q |
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| T |
45063112 |
cgaattttatccaaagcctgtaatgaaaaaaattcagaatcaattattctaaagtaatgtaatgcgaccaaaagaaatagaaaatgaagaataagaaaaa |
45063211 |
T |
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| Q |
315 |
ct |
316 |
Q |
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|| |
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| T |
45063212 |
ct |
45063213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 18619742 - 18619595
Alignment:
| Q |
86 |
ttacctgctttagtcatgccaatgccactatcaatgattgatagtgttttgttagccttatcaggaacaagtctgatgaaaagctctggctgagcatcga |
185 |
Q |
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| T |
18619742 |
ttacctgctttggtcatgccaatgccactgtcaatgatggaaagagtattgttggctttgtcaggaacaagcctaatgaaaagctctggttgcccatcaa |
18619643 |
T |
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| Q |
186 |
gcttgctcttgtccgttaagctttcaaatcgaattttatccaaagcct |
233 |
Q |
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| T |
18619642 |
gcttgctcttatcagtcaaactttcaaaccgaattttgtccaaagcct |
18619595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 42166767 - 42166920
Alignment:
| Q |
80 |
attaatttacctgctttagtcatgccaatgccactatcaatgattgatagtgttttgttagccttatcaggaacaagtctga-tgaaaagctctggctga |
178 |
Q |
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||||| ||||| ||||| ||||| ||||| |||||||||||||| | | || ||||| | ||| ||||||| || | ||| |||| | |||||||||| |
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| T |
42166767 |
attaacttaccagctttggtcattccaatcccactatcaatgatagtcaaagtgttgttggtcttgtcaggaataa-tgtgaatgaacaactctggctga |
42166865 |
T |
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| Q |
179 |
gcatcgagcttgctcttgtccgttaagctttcaaatcgaattttatccaaagcct |
233 |
Q |
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| T |
42166866 |
gaatcaagcttgctcttgtcggtcaagccctcaaaccgaatcttatccaaagcct |
42166920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 42177408 - 42177561
Alignment:
| Q |
80 |
attaatttacctgctttagtcatgccaatgccactatcaatgattgatagtgttttgttagccttatcaggaacaagtctga-tgaaaagctctggctga |
178 |
Q |
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||||| ||||| ||||| ||||| ||||| |||||||||||||| | | || ||||| | ||| ||||||| || | ||| |||| | |||||||||| |
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| T |
42177408 |
attaacttaccagctttggtcattccaatcccactatcaatgatagtcaaagtgttgttggtcttgtcaggaataa-tgtgaatgaacaactctggctga |
42177506 |
T |
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| Q |
179 |
gcatcgagcttgctcttgtccgttaagctttcaaatcgaattttatccaaagcct |
233 |
Q |
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| T |
42177507 |
gaatcaagcttgctcttgtcggtcaagccctcgaaccgaatcttatccaaagcct |
42177561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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