View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_29 (Length: 318)
Name: NF14234_high_29
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 37019879 - 37020172
Alignment:
| Q |
18 |
accagaatcaagagaaattcctccatctttctccagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaact |
117 |
Q |
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| T |
37019879 |
accagaatcaagagaaattcctccatctttttccagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaact |
37019978 |
T |
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| Q |
118 |
acatttgaattatctgcaacaacatagaaacatatataaatagtgtcaatttgtgtcttaaaaaatactcaacaaatccatggtnnnnnnngtaattatt |
217 |
Q |
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| T |
37019979 |
acatttgaattatctgcaccaacatagaaacatatataaatagtgtcaatttgtgtcttaaaaaatactcaacaaatccatggtaaaaaaagtaattatt |
37020078 |
T |
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| Q |
218 |
gcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatccatttatatgcttattgtaagagtacatcactgtttcctttgc |
311 |
Q |
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| T |
37020079 |
gcttacttgcaatctttgatgcctcttcatcttcaagcagtgcagcaaatccatttatatgcttattgtaagagtacatcactgtttcctttgc |
37020172 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 31054409 - 31054490
Alignment:
| Q |
54 |
tccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacatttgaattatctgca |
135 |
Q |
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| T |
31054409 |
tccaagaaattcccatgaacgtgtagtgtgtaatttatgctctttgctcaagaacacagacaccacctttggattttctgca |
31054490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 31198046 - 31197974
Alignment:
| Q |
51 |
cagtccaagaaagtcccatgaccttgtagtgtgcaatttatattccttgctcaagaaaacagaaactacattt |
123 |
Q |
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| T |
31198046 |
cagtccaagaaattcccatgaccgggtagtgtgcagtttatgaggtttgctcaagaacacagacactacattt |
31197974 |
T |
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