View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_3 (Length: 695)
Name: NF14234_high_3
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 236 - 678
Target Start/End: Complemental strand, 18110415 - 18109973
Alignment:
| Q |
236 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcacccttttgagccttttca |
335 |
Q |
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| T |
18110415 |
agcactcattcctactatcttttcctctaaattttctttggtaaccaatttctctattgtttttggttctacttcctcttcacccttttgagccttttca |
18110316 |
T |
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| Q |
336 |
tttgtttgtgttttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
435 |
Q |
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| T |
18110315 |
tttgtttgtgctttggttctctctatagatgttggttttgactccaacacttgttgaccattttgaggcttttcatctatttgtgttttggctctctcta |
18110216 |
T |
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| Q |
436 |
ttgatgttggtcttgtttcaaattcttcttgacccttttgagacttttcatctatttggtcattggttgtgtctttagatgttggttttggctcaaattc |
535 |
Q |
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| T |
18110215 |
ttgatgttggtcttgtttcaaattcttcttgacccttttgagacttttcatctatttggtcattggttgtgtctttagatgttggttttggctcaaattc |
18110116 |
T |
|
| Q |
536 |
ttgttgacccttttgaggaatttgagatgatgtgtcatcatcattttgtgtcnnnnnnncaatgctttgagaagtttgaggtgaatcacttttcatgtct |
635 |
Q |
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| T |
18110115 |
ttgttgacccttttgaggaatttgagatgatgtgtcatcatcattttgtgtctttttttcaatgctttgagaagtttgaggtgaatcacttttcatgtct |
18110016 |
T |
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| Q |
636 |
ttggttgattcttccaaattagtagattgtggtgatggaatat |
678 |
Q |
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| T |
18110015 |
ttagttgattcttccaaattagtagattgtggtggtggaatat |
18109973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 18110639 - 18110477
Alignment:
| Q |
12 |
tgagaagaagtagcagcaaattttctgattccattctttccttcttgatttggaggaattctgcagcaagattccttttccttctctggaacatttggag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110639 |
tgagaagaagtagcagcaaattttctgattccattctttccttcttgattgggaggaattctgcagcaagattccttttccttctctggaacatttggag |
18110540 |
T |
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| Q |
112 |
cagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
174 |
Q |
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| T |
18110539 |
cagaaggttctgctttttcaacttccttttcttctaagttttgattcttgcttgactcataag |
18110477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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