View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_31 (Length: 318)

Name: NF14234_high_31
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_31
NF14234_high_31
[»] chr5 (2 HSPs)
chr5 (15-300)||(16406146-16406431)
chr5 (232-297)||(24491919-24491984)
[»] chr4 (2 HSPs)
chr4 (28-102)||(40306147-40306221)
chr4 (69-97)||(25151189-25151217)
[»] chr6 (1 HSPs)
chr6 (253-287)||(30795119-30795153)
[»] chr8 (1 HSPs)
chr8 (54-91)||(13092696-13092733)
[»] chr1 (1 HSPs)
chr1 (204-288)||(18028778-18028862)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 16406146 - 16406431
Alignment:
Q  15 gatgaatatgtcttgaaggaaaaatttaaattgatcaatggaagcttgaaaacttggcatcagaatcatactcaaaatttagaaggaagaattcatgggg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16406146 gatgaatatgtcttgaaggaaaaatttaaattgatcaatggaagcttgaaaacttggcatcagaatcatactcaaaatttagaaggaagaattcatgggg 16406245  T
Q  115 ctaaagagcatatttctctattagatgttaaaggggaggaccacgacttggaggtggaagagcttcagtctttattggttgatatctttctttatctaag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16406246 ctaaagagcatatttctctattagatgttaaaggggaggaccacgacttggagatggaagagcttcagtctttattggttgatatctttctttatctaag 16406345  T
Q  215 ttaaattatagtatccagtggcaaaattctagattaaattggttgagagagggagatgttaattctaaatttttccacggtattat 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16406346 ttaaattatagtatccagtggcaaaattttagattaaattggttgagagagggagatgttaattctaaatttttccacggtattat 16406431  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 24491984 - 24491919
Alignment:
Q  232 gtggcaaaattctagattaaattggttgagagagggagatgttaattctaaatttttccacggtat 297  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||| |||||||  |||||||    
T  24491984 gtggtaaaattctagattaaattggttgagagagggatatgttagttctgaatttttaaacggtat 24491919  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 40306221 - 40306147
Alignment:
Q  28 tgaaggaaaaatttaaattgatcaatggaagcttgaaaacttggcatcagaatcatactcaaaatttagaaggaa 102  Q
    ||||||||||||| ||||| |||||  || || |||||||||||||||| ||||| |||||||| ||| ||||||    
T  40306221 tgaaggaaaaattaaaattaatcaaaagatgcctgaaaacttggcatcaaaatcacactcaaaaattaaaaggaa 40306147  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 25151189 - 25151217
Alignment:
Q  69 tggcatcagaatcatactcaaaatttaga 97  Q
    |||||||||||||||||||||||||||||    
T  25151189 tggcatcagaatcatactcaaaatttaga 25151217  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 30795119 - 30795153
Alignment:
Q  253 ttggttgagagagggagatgttaattctaaatttt 287  Q
    |||||||| ||||||||||||||||||||||||||    
T  30795119 ttggttgaaagagggagatgttaattctaaatttt 30795153  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 13092733 - 13092696
Alignment:
Q  54 ggaagcttgaaaacttggcatcagaatcatactcaaaa 91  Q
    ||||||||||| || |||||||||||||||||||||||    
T  13092733 ggaagcttgaacacgtggcatcagaatcatactcaaaa 13092696  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 18028862 - 18028778
Alignment:
Q  204 ctttatctaagttaaattatagtatccagtggcaaaattctagattaaattggttgagagagggagatgttaattctaaattttt 288  Q
    |||||||||| ||| || |||||||  ||||||||||||| ||| ||| ||| ||||  ||||| ||||  ||||||||||||||    
T  18028862 ctttatctaaattacataatagtattgagtggcaaaattcaagaataatttgattgaaggagggggatgcaaattctaaattttt 18028778  T

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