View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_32 (Length: 314)

Name: NF14234_high_32
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_32
NF14234_high_32
[»] chr1 (1 HSPs)
chr1 (34-314)||(47384186-47384466)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 34 - 314
Target Start/End: Original strand, 47384186 - 47384466
Alignment:
Q  34 ggtatacttaacgattgatacacaaacttaatgtttgtctaatgcaataatgtggtttacttttgctcagtaattgaacccacannnnnnncgatgaatt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||       |||||||||    
T  47384186 ggtatacttaacgattgatacacaaacttaatgtttgtctaatgcgataatgtggtttacttttgcttagtaattgaacctacatttttttcgatgaatt 47384285  T
Q  134 tctccctttctcaatactacccgtttttacacccaaataaaattacatgtctttcgtgtccattaactacaacttagcctgtatgcaagaaattgactct 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| ||||||||     
T  47384286 tctccctttctcaatactacccgtttttacacccaaataaaattacatgtctctcgtgtccattaagtacaacttagtctgtatgcaagacattgactca 47384385  T
Q  234 tccacaaagacgttgatatgcaaaagtttgagtttgaagtcggggcaaattcaccacttctccacacgttaagcgtgagtc 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47384386 tccataaagacgttgatatgcaaaagtttgagtttgaagtcggggcaaattcaccacttctccacacgttaagcgtgagtc 47384466  T

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