View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_36 (Length: 297)

Name: NF14234_high_36
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_36
NF14234_high_36
[»] chr7 (16 HSPs)
chr7 (19-231)||(10422019-10422237)
chr7 (203-250)||(47342437-47342484)
chr7 (203-247)||(27263352-27263396)
chr7 (203-247)||(27270246-27270290)
chr7 (197-264)||(7670439-7670506)
chr7 (203-250)||(19626528-19626575)
chr7 (197-240)||(20455141-20455184)
chr7 (197-250)||(6023314-6023367)
chr7 (197-250)||(10244732-10244785)
chr7 (197-250)||(46737790-46737843)
chr7 (197-234)||(48980492-48980529)
chr7 (203-251)||(31037645-31037693)
chr7 (203-231)||(34448632-34448660)
chr7 (195-231)||(35224121-35224157)
chr7 (203-255)||(36341063-36341115)
chr7 (195-231)||(43346586-43346622)
[»] chr5 (12 HSPs)
chr5 (195-250)||(20688043-20688098)
chr5 (197-250)||(2839803-2839856)
chr5 (198-250)||(27903119-27903171)
chr5 (195-251)||(34987153-34987209)
chr5 (197-230)||(4573082-4573115)
chr5 (197-250)||(30488930-30488983)
chr5 (197-262)||(39610332-39610397)
chr5 (197-229)||(16089455-16089487)
chr5 (195-231)||(16188827-16188863)
chr5 (195-231)||(16188929-16188965)
chr5 (195-231)||(33014266-33014302)
chr5 (198-250)||(37054272-37054324)
[»] chr4 (18 HSPs)
chr4 (203-264)||(10148190-10148251)
chr4 (197-250)||(675923-675976)
chr4 (198-250)||(28435251-28435303)
chr4 (195-250)||(25999400-25999455)
chr4 (197-240)||(55421582-55421625)
chr4 (197-255)||(50380834-50380892)
chr4 (197-250)||(11949766-11949819)
chr4 (197-250)||(20383493-20383546)
chr4 (203-260)||(29908067-29908124)
chr4 (197-242)||(30051878-30051923)
chr4 (197-250)||(43374275-43374328)
chr4 (197-234)||(47015587-47015624)
chr4 (195-231)||(4916158-4916194)
chr4 (203-231)||(8020669-8020697)
chr4 (195-231)||(21623441-21623477)
chr4 (198-250)||(22040656-22040708)
chr4 (195-231)||(45837141-45837177)
chr4 (203-231)||(52132324-52132352)
[»] chr1 (19 HSPs)
chr1 (207-260)||(47417798-47417851)
chr1 (195-242)||(45190280-45190327)
chr1 (194-252)||(4302454-4302512)
chr1 (197-250)||(13590115-13590168)
chr1 (197-250)||(25532978-25533031)
chr1 (195-250)||(50250303-50250358)
chr1 (198-256)||(34521187-34521245)
chr1 (197-231)||(37383813-37383847)
chr1 (197-251)||(46392238-46392292)
chr1 (197-250)||(20481105-20481158)
chr1 (197-250)||(27533248-27533301)
chr1 (197-234)||(35308190-35308227)
chr1 (197-250)||(41769818-41769871)
chr1 (197-250)||(42045375-42045428)
chr1 (195-264)||(44860872-44860941)
chr1 (197-250)||(48681936-48681989)
chr1 (195-231)||(3509963-3509999)
chr1 (216-260)||(11913754-11913798)
chr1 (195-231)||(26803473-26803509)
[»] chr8 (19 HSPs)
chr8 (194-250)||(37141359-37141415)
chr8 (203-254)||(6447200-6447251)
chr8 (197-264)||(41324119-41324186)
chr8 (198-256)||(8717472-8717530)
chr8 (197-250)||(32051535-32051588)
chr8 (203-247)||(33620909-33620953)
chr8 (203-250)||(5179804-5179851)
chr8 (203-242)||(40167333-40167372)
chr8 (195-254)||(41535326-41535385)
chr8 (202-252)||(4830018-4830068)
chr8 (197-250)||(8461839-8461892)
chr8 (194-231)||(21589223-21589260)
chr8 (197-250)||(27718897-27718950)
chr8 (198-234)||(6446923-6446959)
chr8 (203-231)||(7433151-7433179)
chr8 (194-250)||(19734317-19734373)
chr8 (199-231)||(33555437-33555469)
chr8 (203-231)||(38763537-38763565)
chr8 (203-231)||(43240345-43240373)
[»] chr3 (15 HSPs)
chr3 (197-252)||(977942-977997)
chr3 (205-252)||(9856106-9856153)
chr3 (197-256)||(10926474-10926533)
chr3 (197-256)||(21331414-21331473)
chr3 (203-250)||(41817510-41817557)
chr3 (197-231)||(2153523-2153557)
chr3 (197-231)||(9321427-9321461)
chr3 (216-250)||(48517695-48517729)
chr3 (197-234)||(7938729-7938766)
chr3 (197-242)||(29631191-29631236)
chr3 (197-250)||(48796221-48796274)
chr3 (197-250)||(50037316-50037369)
chr3 (195-231)||(25441522-25441558)
chr3 (195-231)||(34326005-34326041)
chr3 (206-250)||(39779038-39779082)
[»] chr2 (19 HSPs)
chr2 (195-256)||(30089052-30089113)
chr2 (195-256)||(30125656-30125717)
chr2 (195-256)||(30243253-30243314)
chr2 (198-250)||(44488013-44488065)
chr2 (197-252)||(20120722-20120777)
chr2 (203-250)||(22558988-22559035)
chr2 (203-250)||(35194283-35194330)
chr2 (197-247)||(16877129-16877179)
chr2 (197-247)||(16989260-16989310)
chr2 (197-247)||(27016285-27016335)
chr2 (198-252)||(31476977-31477031)
chr2 (193-250)||(8781653-8781710)
chr2 (197-250)||(29599944-29599997)
chr2 (197-250)||(41356157-41356210)
chr2 (207-260)||(44026623-44026676)
chr2 (195-231)||(3903865-3903901)
chr2 (203-231)||(18789426-18789454)
chr2 (203-259)||(19189838-19189894)
chr2 (195-231)||(25598584-25598620)
[»] chr6 (14 HSPs)
chr6 (203-263)||(1146496-1146556)
chr6 (203-250)||(788877-788924)
chr6 (203-250)||(26356084-26356131)
chr6 (197-231)||(9677240-9677274)
chr6 (203-252)||(8211599-8211648)
chr6 (203-256)||(8916471-8916524)
chr6 (197-250)||(32053793-32053846)
chr6 (203-231)||(3358402-3358430)
chr6 (207-255)||(8629694-8629742)
chr6 (198-250)||(10053256-10053308)
chr6 (206-250)||(12323493-12323537)
chr6 (195-231)||(17935732-17935768)
chr6 (197-261)||(24605701-24605765)
chr6 (195-263)||(30579862-30579930)
[»] scaffold0460 (1 HSPs)
scaffold0460 (205-250)||(1266-1311)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 10422237 - 10422019
Alignment:
Q  19 gttcccacacacttaatcatcacaagtaatgattcattcatacttgaagttgaagnnnnnnnnn-------atttctttaaagtgagatagatataattt 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||                |||||| |||||||| ||||||||||||     
T  10422237 gttcacacacacttaatcatcacaagtaatgattcattcatacttgaagttgaagtttatactttttatttatttctctaaagtgaaatagatataattc 10422138  T
Q  112 caatatgtaattttttcgtaccaattatagcttttcttaaagagtatgaagggtaatt-aaattgtgtaaagaagtcatcggaaaacttagttcagttgg 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| || ||  |||||| ||||||    
T  10422137 caatatgtaatttttt-gtaccaattatagcttttcttaaagagtatgtagggtaattaaaattgcgtaaagaagtcattgg-aagtttagtttagttgg 10422040  T
Q  211 tttggacaatgcataatatat 231  Q
    |||  | ||||||||||||||    
T  10422039 tttaaaaaatgcataatatat 10422019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 47342484 - 47342437
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||    
T  47342484 tcagttggtttggacaatgcataatatatgcaaggtccggagttcaaa 47342437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 27263352 - 27263396
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||    
T  27263352 tcagttggtatggacaatgcataatatatgcaaggttcggagttc 27263396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 27270246 - 27270290
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||    
T  27270246 tcagttggtatggacaatgcataatatatgcaaggttcggagttc 27270290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 7670439 - 7670506
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactacc 264  Q
    ||||| |||||||||||| |||||||||||||||| || ||| ||| ||||||| ||||  |||||||    
T  7670439 cttagctcagttggtttgaacaatgcataatatatgcaaggtccggggttcaaacctcgaccactacc 7670506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 19626575 - 19626528
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||||||||||||||||| || ||| ||| |||||||    
T  19626575 tcagttggtttggacaatgcataatatatgcaaggtccggggttcaaa 19626528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 20455141 - 20455184
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttc 240  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  20455141 cttagttcagttggtttagacaatgcataatatattcaaggttc 20455184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 6023314 - 6023367
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||||||||||| ||| |||| || ||||||| |||||||    
T  6023314 cttagctcagttggtttggacaatgcttaaaatatgcaaggttcggggttcaaa 6023367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 10244732 - 10244785
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||||||| || ||| ||| |||||||    
T  10244732 cttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaa 10244785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 46737790 - 46737843
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||| |||||||||||||||||||||| || ||| ||| |||||||    
T  46737790 cttagctcagtttgtttggacaatgcataatatatgcaaggtccggggttcaaa 46737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 48980492 - 48980529
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatataca 234  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  48980492 cttagctcagttggtatggacaatgcataatatataca 48980529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 31037693 - 31037645
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaat 251  Q
    |||||||||  | ||||||||||||||||||| || |||||||||||||    
T  31037693 tcagttggtaggaacaatgcataatatatacacgggtcggagttcaaat 31037645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 34448660 - 34448632
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  34448660 tcagttggtttggacaatgcataatatat 34448632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 35224121 - 35224157
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  35224121 aacttagttcagttggttgggacaatgcataaaatat 35224157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 36341115 - 36341063
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcg 255  Q
    ||||||||| || ||||||||||| ||||||| ||| ||||||||||| ||||    
T  36341115 tcagttggtatgaacaatgcataaaatatacaaggtccggagttcaaacctcg 36341063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 43346622 - 43346586
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  43346622 aacttagctcagttggtatggacaatgcataatatat 43346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 20688043 - 20688098
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||    
T  20688043 aacttagctcagttggtttggacaatgcataatatatgcaaggtccggagttcaaa 20688098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2839803 - 2839856
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||||| |||||||||||||| || ||||||| |||||||    
T  2839803 cttagctcagttggtttggataatgcataatatatccaaggttcggggttcaaa 2839856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 27903119 - 27903171
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||||||| || |||||||||||||||| || ||||||| |||||||    
T  27903119 ttagttcagttggtatgaacaatgcataatatatgcaaggttcggggttcaaa 27903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 34987209 - 34987153
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaat 251  Q
    ||||||| ||||||||| |||| |||||||||||||| || ||||||| ||||||||    
T  34987209 aacttagctcagttggtgtggataatgcataatatatccaaggttcggggttcaaat 34987153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 4573115 - 4573082
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatata 230  Q
    ||||||||||||||| ||||||||||||||||||    
T  4573115 cttagttcagttggtatggacaatgcataatata 4573082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 30488930 - 30488983
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||| | || ||||||||||||||||||| |||| || |||||||    
T  30488930 cttagttcagttgatatgaacaatgcataatatatacaaggtttggggttcaaa 30488983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 39610397 - 39610332
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcacta 262  Q
    ||||| ||||||| | ||||||||||||||||||| ||  ||| |||||||||| |||| ||||||    
T  39610397 cttagctcagttgatatggacaatgcataatatatgcaatgtttggagttcaaacctcgatcacta 39610332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 16089455 - 16089487
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatat 229  Q
    ||||||||||||||| |||||||||||||||||    
T  16089455 cttagttcagttggtatggacaatgcataatat 16089487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 16188827 - 16188863
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  16188827 aacttagctcagttggtatggacaatgcataatatat 16188863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 16188929 - 16188965
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  16188929 aacttagctcagttggtatggacaatgcataatatat 16188965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 33014302 - 33014266
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  33014302 aacttagctcagttggtgtggacaatgcataatatat 33014266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 37054324 - 37054272
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||| |||||||||  ||||||||||||||||||| | ||||||| |||||||    
T  37054324 ttagctcagttggtagggacaatgcataatatatataaggttcggggttcaaa 37054272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 10148190 - 10148251
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactacc 264  Q
    ||||||| ||||||||||||||||||||| || ||||| ||||||||| ||||| |||||||    
T  10148190 tcagttgatttggacaatgcataatatatgcaaggttcagagttcaaacctcggccactacc 10148251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 675923 - 675976
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||    
T  675923 cttagctcagttggtttggacaatgcataatatatgcaaggtccggggttcaaa 675976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 28435303 - 28435251
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||| |||||||    
T  28435303 ttagctcagttggtatggacaatgcataatatatgcaaggttcggggttcaaa 28435251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 25999400 - 25999455
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||| |||||||||  ||||||||||||||||||| | ||||| |||||||||    
T  25999400 aacttagctcagttggtagggacaatgcataatatatataaggttccgagttcaaa 25999455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 55421625 - 55421582
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttc 240  Q
    ||||| ||||||||||||||||||||||||||||| || |||||    
T  55421625 cttagctcagttggtttggacaatgcataatatatgcaaggttc 55421582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 50380892 - 50380834
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcg 255  Q
    |||| |||||||||| || ||||||||||||||||  | ||| ||||||||||||||||    
T  50380892 cttaattcagttggtatgaacaatgcataatatatgtaaggtccggagttcaaatctcg 50380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 11949819 - 11949766
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||||||| || ||| ||| |||||||    
T  11949819 cttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaa 11949766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 20383493 - 20383546
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||||||| || ||| ||| |||||||    
T  20383493 cttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaa 20383546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 29908067 - 29908124
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcac 260  Q
    |||||||||  |||||||||||||||||| || ||| ||||||||||| |||| ||||    
T  29908067 tcagttggtaaggacaatgcataatatatgcaaggtccggagttcaaacctcgatcac 29908124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 30051923 - 30051878
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcgg 242  Q
    ||||||||||||| | ||||||||||||||||||| || |||||||    
T  30051923 cttagttcagttgttatggacaatgcataatatatgcaaggttcgg 30051878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 43374328 - 43374275
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||| | |||||||||||||| |||| || |||||||||||||||    
T  43374328 cttagctcagttgatatggacaatgcataaaatatgcaaggttcggagttcaaa 43374275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 47015624 - 47015587
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatataca 234  Q
    |||||||||||| || ||||||||||||||||||||||    
T  47015624 cttagttcagttagtatggacaatgcataatatataca 47015587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 4916158 - 4916194
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  4916158 aacttagctcagttggtttgaacaatgcataatatat 4916194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 8020697 - 8020669
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  8020697 tcagttggtttggacaatgcataatatat 8020669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 21623477 - 21623441
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||  ||||||||||||||||||    
T  21623477 aacttagttcagttggtagggacaatgcataatatat 21623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 22040656 - 22040708
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||| ||||||| | ||||||||||||||||||| || ||||||| |||||||    
T  22040656 ttagctcagttgatatggacaatgcataatatatgcaaggttcggggttcaaa 22040708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 45837177 - 45837141
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  45837177 aacttagctcagttggtatggacaatgcataatatat 45837141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 52132352 - 52132324
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  52132352 tcagttggtttggacaatgcataatatat 52132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 47417798 - 47417851
Alignment:
Q  207 ttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcac 260  Q
    |||||| |||||||||||||||||| || ||||||||||||||| |||||||||    
T  47417798 ttggttaggacaatgcataatatatgcaaggttcggagttcaaacctcggtcac 47417851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 45190327 - 45190280
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcgg 242  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||    
T  45190327 aacttagttcagttggtatggacaatgcataatatatgcaaggttcgg 45190280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 4302454 - 4302512
Alignment:
Q  194 aaacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    |||||||||| ||||||| ||||||||||||||||||| || | | |||||||||||||    
T  4302454 aaacttagtttagttggtatggacaatgcataatatatgcaagatccggagttcaaatc 4302512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 13590115 - 13590168
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||||||||||||||| ||||  | |||||||||||||||    
T  13590115 cttagctcagttggtttggacaatgcataaaatatgtaaggttcggagttcaaa 13590168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 25532978 - 25533031
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||    
T  25532978 cttagttcagttggtatggacaatgcataatatatgcaaggtccggggttcaaa 25533031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 50250358 - 50250303
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||||| | |||||||||||| ||||||| ||||| | |||||||    
T  50250358 aacttagttcagttggtatagacaatgcataaaatatacaaggttcagggttcaaa 50250303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 34521245 - 34521187
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    |||| ||||||||| ||||||||||||||||||| || ||| ||| ||||||| |||||    
T  34521245 ttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcaaacctcgg 34521187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 37383847 - 37383813
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||| ||||||||||||||    
T  37383847 cttagttcagttggtttggataatgcataatatat 37383813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 46392238 - 46392292
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaat 251  Q
    |||||||||||||| ||||| |||||||||||||| || ||| ||| ||||||||    
T  46392238 cttagttcagttggcttggataatgcataatatatccaaggtccggggttcaaat 46392292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 20481105 - 20481158
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||| |||||||||||  ||| || |||||||||||||||    
T  20481105 cttagctcagttggtttgaacaatgcataaattatgcaaggttcggagttcaaa 20481158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 27533248 - 27533301
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||  |||||||||||||||||| || ||||||| |||||||    
T  27533248 cttagatcagttggtagggacaatgcataatatatgcaaggttcggggttcaaa 27533301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 35308190 - 35308227
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatataca 234  Q
    ||||||||||||||| || |||||||||||||||||||    
T  35308190 cttagttcagttggtatgaacaatgcataatatataca 35308227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 41769871 - 41769818
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||||| |||||||||||||| || ||| ||| |||||||    
T  41769871 cttagctcagttggtttggataatgcataatatatccaaggtccggggttcaaa 41769818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 42045428 - 42045375
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||||||| || |||  ||||||||||    
T  42045428 cttagctcagttggtatggacaatgcataatatatgcaaggtctggagttcaaa 42045375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 44860941 - 44860872
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactacc 264  Q
    ||||||| |||||||||||||||||||||||| |||| || |||  || ||||||| | ||| |||||||    
T  44860941 aacttagctcagttggtttggacaatgcataaaatatccaaggtctggggttcaaaccccggccactacc 44860872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 48681989 - 48681936
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| || |||||||||||||||| || ||||||||| |||||    
T  48681989 cttagctcagttggtatgaacaatgcataatatatgcaaggttcggagctcaaa 48681936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 3509999 - 3509963
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  3509999 aacttagctcagttggtatggacaatgcataatatat 3509963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 11913754 - 11913798
Alignment:
Q  216 acaatgcataatatatacagggttcggagttcaaatctcggtcac 260  Q
    ||||||||||||||||||| |||||||  |||||| |||||||||    
T  11913754 acaatgcataatatatacaaggttcgggattcaaacctcggtcac 11913798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 26803509 - 26803473
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  26803509 aacttagctcagttggtatggacaatgcataatatat 26803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 37141359 - 37141415
Alignment:
Q  194 aaacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||| |||||||||| ||||||||||||||||||| || ||||||| |||||||    
T  37141359 aaacttaattcagttggtatggacaatgcataatatatgcaaggttcggggttcaaa 37141415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 6447200 - 6447251
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctc 254  Q
    ||||||||| ||||||||||||||||||| || ||| |||||||||||||||    
T  6447200 tcagttggtatggacaatgcataatatatgcaaggtccggagttcaaatctc 6447251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 41324119 - 41324186
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactacc 264  Q
    ||||||||  |||||||||||||||||||| |||| || ||||||  ||||||||| |||||||||||    
T  41324119 cttagttcgattggtttggacaatgcataaaatatgcaaggttcgaggttcaaatcccggtcactacc 41324186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 8717530 - 8717472
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    |||| ||||||||| ||||||||||||||||||| || ||||||| ||||||| |||||    
T  8717530 ttagctcagttggtatggacaatgcataatatatgcaaggttcggggttcaaacctcgg 8717472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 32051588 - 32051535
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||    
T  32051588 cttagctcagttggtttggacaatgcataatatatgcaaggtccggggttcaaa 32051535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 33620909 - 33620953
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    |||||| || |||||||||||||||||||||| ||||||||||||    
T  33620909 tcagttagtatggacaatgcataatatatacaaggttcggagttc 33620953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 5179804 - 5179851
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||  ||||||||||||||||||||| ||||||| |||||||    
T  5179804 tcagttggtaaggacaatgcataatatatacaaggttcggggttcaaa 5179851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 40167333 - 40167372
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcgg 242  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  40167333 tcagttggtatggacaatgcataatatatacaaggttcgg 40167372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 41535326 - 41535385
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctc 254  Q
    |||||||||||| ||||    ||||||||||||||||| | |||||||||||||||||||    
T  41535326 aacttagttcagctggtaacaacaatgcataatatatataaggttcggagttcaaatctc 41535385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 4830018 - 4830068
Alignment:
Q  202 ttcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    |||||||||| ||||||||||||||||||| || ||||||| |||| ||||    
T  4830018 ttcagttggtatggacaatgcataatatatgcaaggttcggggttcgaatc 4830068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 8461892 - 8461839
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||| ||||||||||||| |||| || ||| |||||||||||    
T  8461892 cttagctcagttggttgggacaatgcataaaatatgcaaggtccggagttcaaa 8461839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 21589260 - 21589223
Alignment:
Q  194 aaacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  21589260 aaacttagttcagctggtatggacaatgcataatatat 21589223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 27718950 - 27718897
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||| | ||||||||||||||||||| || ||| |||||||||||    
T  27718950 cttagctcagttgatatggacaatgcataatatatgcaaggtccggagttcaaa 27718897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 6446923 - 6446959
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatataca 234  Q
    ||||||||||||||  |||||||||||||||||||||    
T  6446923 ttagttcagttggtagggacaatgcataatatataca 6446959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 7433151 - 7433179
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  7433151 tcagttggtttggacaatgcataatatat 7433179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 19734317 - 19734373
Alignment:
Q  194 aaacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||| |||||||||||| ||||| |||||||||| || ||||| || ||||||    
T  19734317 aaacttagctcagttggtttgaacaatacataatatatgcaaggttcagaattcaaa 19734373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 33555437 - 33555469
Alignment:
Q  199 tagttcagttggtttggacaatgcataatatat 231  Q
    ||||||||||||| |||||||||||||||||||    
T  33555437 tagttcagttggtatggacaatgcataatatat 33555469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 38763565 - 38763537
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  38763565 tcagttggtttggacaatgcataatatat 38763537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 43240345 - 43240373
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  43240345 tcagttggtttggacaatgcataatatat 43240373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 977997 - 977942
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    ||||| ||||||||| ||||||||||||||||||| || ||| |||||||||||||    
T  977997 cttagctcagttggtatggacaatgcataatatatgcaaggtccggagttcaaatc 977942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 9856153 - 9856106
Alignment:
Q  205 agttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    |||||||||| |||||||||||||||| || |||||||||||| ||||    
T  9856153 agttggtttgaacaatgcataatatattcaaggttcggagttcgaatc 9856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 10926474 - 10926533
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    ||||| |||||||||  |||||||||||||||||| || ||||||| |||||||| ||||    
T  10926474 cttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcaaatgtcgg 10926533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 21331473 - 21331414
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    ||||| ||||||| | ||||||||||||||||||| || ||||||| |||| ||||||||    
T  21331473 cttagctcagttgttatggacaatgcataatatatgcaaggttcggggttcgaatctcgg 21331414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 41817510 - 41817557
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||||||||||||||||| || ||| ||| |||||||    
T  41817510 tcagttggtttggacaatgcataatatatgcaaggtccggggttcaaa 41817557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 2153557 - 2153523
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatat 231  Q
    |||| ||||||||||||||||||||||||||||||    
T  2153557 cttaattcagttggtttggacaatgcataatatat 2153523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 9321461 - 9321427
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatat 231  Q
    ||||| |||||||||||||||||||||||||||||    
T  9321461 cttagctcagttggtttggacaatgcataatatat 9321427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 48517695 - 48517729
Alignment:
Q  216 acaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||||||| |||||||||||||||    
T  48517695 acaatgcataatatatacaaggttcggagttcaaa 48517729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 7938729 - 7938766
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatataca 234  Q
    ||||||||||||||| || |||||||||||||||||||    
T  7938729 cttagttcagttggtatgaacaatgcataatatataca 7938766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 29631191 - 29631236
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcgg 242  Q
    ||||| ||||||||| ||||||||||||||||||| || |||||||    
T  29631191 cttagctcagttggtatggacaatgcataatatatgcaaggttcgg 29631236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 48796274 - 48796221
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||| ||||||||||||||||| |||| || ||||||| |||||||    
T  48796274 cttagctcagttagtttggacaatgcataagatatgcaaggttcggggttcaaa 48796221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 50037316 - 50037369
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||| ||| || ||||||| |||||||    
T  50037316 cttagctcagttggtatggacaatgcataatgtatgcaaggttcggggttcaaa 50037369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 25441558 - 25441522
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  25441558 aacttagctcagttggtatggacaatgcataatatat 25441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34326041 - 34326005
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    |||||| |||||||||| |||||||||||||||||||    
T  34326041 aacttaattcagttggtatggacaatgcataatatat 34326005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 39779038 - 39779082
Alignment:
Q  206 gttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||| ||||||||||||||||||| || ||||||| |||||||    
T  39779038 gttggtatggacaatgcataatatatgcaaggttcggggttcaaa 39779082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 30089052 - 30089113
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    ||||||| |||||||||  ||||||||||||||||||||| ||| ||| ||||||| |||||    
T  30089052 aacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcgg 30089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 30125656 - 30125717
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    ||||||| |||||||||  ||||||||||||||||||||| ||| ||| ||||||| |||||    
T  30125656 aacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcgg 30125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 30243253 - 30243314
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    ||||||| |||||||||   |||||||||||||||||||| ||||||| ||||||| |||||    
T  30243253 aacttagctcagttggtagagacaatgcataatatatacaaggttcggggttcaaacctcgg 30243314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 44488065 - 44488013
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||||||||  ||||||||||||||||||  | |||||||||||||||    
T  44488065 ttagttcagttggtaaggacaatgcataatatatgtaaggttcggagttcaaa 44488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 20120777 - 20120722
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    ||||| |||||||||  |||||||||||||||||| || ||||||| |||||||||    
T  20120777 cttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcaaatc 20120722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 22558988 - 22559035
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||||||||||||||||| ||||||| |||  ||||||||||    
T  22558988 tcagttggtttggacaatgcataaaatatacaaggtctggagttcaaa 22559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 35194330 - 35194283
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||| |||||||||||||||||| || |||| ||||||||||    
T  35194330 tcagttggttcggacaatgcataatatatgcaaggtttggagttcaaa 35194283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 16877129 - 16877179
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    ||||| |||| |||| ||||||||||||||||||| || ||||||||||||    
T  16877129 cttagctcagctggtatggacaatgcataatatatgcaaggttcggagttc 16877179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 16989260 - 16989310
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    ||||| |||| |||| ||||||||||||||||||| || ||||||||||||    
T  16989260 cttagctcagctggtatggacaatgcataatatatgcaaggttcggagttc 16989310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 247
Target Start/End: Original strand, 27016285 - 27016335
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttc 247  Q
    ||||||||||||||| |||| | |||||| ||||||||||| |||||||||    
T  27016285 cttagttcagttggtatggatattgcatattatatacaggggtcggagttc 27016335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 31476977 - 31477031
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    |||| |||||||||  ||| ||||||||||||||||| ||||||| |||||||||    
T  31476977 ttagctcagttggtagggagaatgcataatatatacaaggttcggggttcaaatc 31477031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 8781710 - 8781653
Alignment:
Q  193 aaaacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||| ||||||||| ||||||||||||||| ||| || ||| ||| |||||||    
T  8781710 aaaacttagctcagttggtatggacaatgcataatgtatgcaaggtccggggttcaaa 8781653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 29599944 - 29599997
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| |||||||||||||| |||||||||||||| || ||| ||| |||||||    
T  29599944 cttagctcagttggtttggataatgcataatatatccaaggtccggggttcaaa 29599997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 41356157 - 41356210
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||||| |||  |||||||||||| ||||||| ||||||| |||||||    
T  41356157 cttagttcagttagttgagacaatgcataaaatatacaaggttcggggttcaaa 41356210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 44026623 - 44026676
Alignment:
Q  207 ttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcac 260  Q
    ||||| ||||||| |||||||||||  | ||||||| |||||||||||||||||    
T  44026623 ttggtatggacaacgcataatatatgtaaggttcggggttcaaatctcggtcac 44026676  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 3903901 - 3903865
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  3903901 aacttagttaagttgatttggacaatgcataatatat 3903865  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 18789426 - 18789454
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  18789426 tcagttggtttggacaatgcataatatat 18789454  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 19189894 - 19189838
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtca 259  Q
    |||||| || ||||||||| |||| |||| || ||||||||||||||| ||||||||    
T  19189894 tcagttagtatggacaatgtataaaatatgcaaggttcggagttcaaacctcggtca 19189838  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 25598620 - 25598584
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  25598620 aacttagctcagttggtatggacaatgcataatatat 25598584  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 263
Target Start/End: Complemental strand, 1146556 - 1146496
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactac 263  Q
    ||||||||||  |||||||||||| ||||| | ||||||| ||||||||||||| ||||||    
T  1146556 tcagttggttgagacaatgcataaaatatataaggttcggtgttcaaatctcggccactac 1146496  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 788877 - 788924
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||  |||||||||||||||||| || |||||||||||||||    
T  788877 tcagttggtaaggacaatgcataatatatgcaaggttcggagttcaaa 788924  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 26356131 - 26356084
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||| |||||||||||||||||| || ||||||| |||||||    
T  26356131 tcagttggttgggacaatgcataatatatgcaaggttcggggttcaaa 26356084  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 9677240 - 9677274
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatat 231  Q
    ||||| |||||||||||||||||||||||||||||    
T  9677240 cttagctcagttggtttggacaatgcataatatat 9677274  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 8211648 - 8211599
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatc 252  Q
    ||||||||| |||| |||||||||||||||||  |||||| |||||||||    
T  8211648 tcagttggtatggataatgcataatatatacaaagttcggggttcaaatc 8211599  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 8916524 - 8916471
Alignment:
Q  203 tcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcgg 256  Q
    |||||||||  ||||||| |||||||||| || ||| |||||||||||||||||    
T  8916524 tcagttggtagggacaatacataatatatgcaaggtccggagttcaaatctcgg 8916471  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 32053793 - 32053846
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||| ||||||||| ||||||||||||||||||| || ||||||  |||||||    
T  32053793 cttagctcagttggtatggacaatgcataatatatgcaaggttcgtggttcaaa 32053846  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 3358402 - 3358430
Alignment:
Q  203 tcagttggtttggacaatgcataatatat 231  Q
    |||||||||||||||||||||||||||||    
T  3358402 tcagttggtttggacaatgcataatatat 3358430  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 8629742 - 8629694
Alignment:
Q  207 ttggtttggacaatgcataatatatacagggttcggagttcaaatctcg 255  Q
    ||||| ||||||||||||||||||| || ||||||| ||||||| ||||    
T  8629742 ttggtatggacaatgcataatatatgcaaggttcggggttcaaacctcg 8629694  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 10053256 - 10053308
Alignment:
Q  198 ttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||| ||||||||| |||||||||||||||||||  |  ||||||||||||||    
T  10053256 ttagctcagttggtatggacaatgcataatatatgtaaagttcggagttcaaa 10053308  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 12323537 - 12323493
Alignment:
Q  206 gttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    ||||||||| ||||||||||||||||||| ||||| | |||||||    
T  12323537 gttggtttgtacaatgcataatatatacaaggttcagggttcaaa 12323493  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 17935732 - 17935768
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatat 231  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  17935732 aacttagctcagttggtttggacaatgcataaaatat 17935768  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 24605701 - 24605765
Alignment:
Q  197 cttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcact 261  Q
    ||||||||||||| | ||||||||  ||||||||| |||||| |||||||| ||| |||| ||||    
T  24605701 cttagttcagttgatatggacaatatataatatatgcagggtccggagttcgaatatcggacact 24605765  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 30579862 - 30579930
Alignment:
Q  195 aacttagttcagttggtttggacaatgcataatatatacagggttcggagttcaaatctcggtcactac 263  Q
    ||||||| |||||||||| ||||||||||||| |||| || |||| || |||||||  |||| ||||||    
T  30579862 aacttagctcagttggttgggacaatgcataaaatatgcaaggtttggggttcaaacttcggccactac 30579930  T

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Target: scaffold0460 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 1266 - 1311
Alignment:
Q  205 agttggtttggacaatgcataatatatacagggttcggagttcaaa 250  Q
    |||||||||| ||||||||||| ||||||| ||||| |||||||||    
T  1266 agttggtttgaacaatgcataaaatatacaaggttcagagttcaaa 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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