View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_37 (Length: 292)
Name: NF14234_high_37
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 9468253 - 9468515
Alignment:
| Q |
4 |
acttaaattaaatatttataaagggatgtacacataaaaatttacaataatggtgcaaattaaaatatagataggtaagaatcattcaaagtccaagtcc |
103 |
Q |
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| T |
9468253 |
acttaaattaaatatttataaaggggtgtacacataaaaatttacaataatggtgcaaattaaaatatagataggtaagaatcattcaaagtccaagtcc |
9468352 |
T |
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| Q |
104 |
atcatgtgcatcgcaacgtcgcctaaggggcagaaagagactaaaaatataatatatagaaaaagaatcaaatcactgaaggtgaatgacttacaaaaat |
203 |
Q |
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| T |
9468353 |
atcatgtgcatcgcaacgtcgcctaaggggcagaaagagactaaaaatatactatatagaaaaagaatcaaatcactgaaggtgaatgacttacaaa--- |
9468449 |
T |
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| Q |
204 |
tattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgataggatattat |
277 |
Q |
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| T |
9468450 |
--------aaattatcaagaaagatatagagatcaatgattttgagaaagacacagtttttgataggatattat |
9468515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 269
Target Start/End: Complemental strand, 27637762 - 27637699
Alignment:
| Q |
206 |
ttagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgatag |
269 |
Q |
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| T |
27637762 |
ttagagaaactatcaagaaggatctagtgatcaatgagttggagaaagacatggtttttgatag |
27637699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 32043733 - 32043804
Alignment:
| Q |
198 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgatag |
269 |
Q |
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| T |
32043733 |
aaaaactattagagaaactatcaagaaggatctaaagatcaatgagttggagaaagacatggtttttgatag |
32043804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 265
Target Start/End: Complemental strand, 31636059 - 31635992
Alignment:
| Q |
198 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttg |
265 |
Q |
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| T |
31636059 |
aaaaactattagagaaactatcaagaaggatatagagatcaatgagttggagaaacacatggtttttg |
31635992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 5759134 - 5759063
Alignment:
| Q |
198 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagacacagtttttgatag |
269 |
Q |
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| T |
5759134 |
aaaaactattagagaaactaccaagaaggatctagagatcaatgagttggagaaagacatggtttttgatag |
5759063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 27755884 - 27755827
Alignment:
| Q |
198 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
256 |
Q |
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| T |
27755884 |
aaaaactattagagaaat-atctagaaggatatagagatcaatgatttggagaaagaca |
27755827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 26990356 - 26990414
Alignment:
| Q |
198 |
aaaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
256 |
Q |
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| T |
26990356 |
aaaaactattagagaaactatcaagaaggatctagagatcaatgagttggagaaagaca |
26990414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 19119562 - 19119505
Alignment:
| Q |
199 |
aaaattattagagaaattatcaagaaagatatagtgatcaatgattttgagaaagaca |
256 |
Q |
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|||| ||||||||||| |||||||| ||| ||| ||||||||| ||||||||||||| |
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| T |
19119562 |
aaaactattagagaaactatcaagatggatctagagatcaatgagtttgagaaagaca |
19119505 |
T |
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