View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_39 (Length: 283)
Name: NF14234_high_39
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 40326540 - 40326796
Alignment:
| Q |
19 |
ccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagtttctatattaacattgtgttctgtagat |
118 |
Q |
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| T |
40326540 |
ccaaactgagtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagtttctatattaacattgtgttctgtagat |
40326639 |
T |
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| Q |
119 |
aactgaacagctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgcaatatacagcttaccgttgcaaatta |
218 |
Q |
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| T |
40326640 |
aactgaacggctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgcaatatacagcataccgttgcaaatta |
40326739 |
T |
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| Q |
219 |
tccccgccaaacaacatgtaccagcagatgctatctgtggtttgttttgcctttgct |
275 |
Q |
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| T |
40326740 |
tccccgccaaacaacatgtaccagcagatgctatctgtggtttgttttgccattgct |
40326796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 28938783 - 28939013
Alignment:
| Q |
28 |
gtgtttcataaccacaatctgtgaatcataggggtgctttgaccgaacatcatctctctcagtttctatattaacattgtgttctgtagataactgaaca |
127 |
Q |
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|||| ||||||||||||| ||||||||||| ||||| || | | || ||||||||| | |||| | |||||||| ||||||| |||||| || | |
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| T |
28938783 |
gtgtctcataaccacaatttgtgaatcataagggtgtcttaatctaagttcatctctcactctttcaaggttaacattatgttctgcagataattgtatg |
28938882 |
T |
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| Q |
128 |
gctaatgtttcccttgttcccctcctcactcttcctaacacagcccttgagtctcctgcatttgcaatatacagcttaccgttgcaaattatccccgcca |
227 |
Q |
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||| |||||||||||||| ||||| | |||||||||||| |||||||||| || | |||||||||||| | | || ||||||||||||||| ||| |
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| T |
28938883 |
gctgatgtttcccttgttgccctctctagtcttcctaacaccacccttgagtcaccagaatttgcaatatataccagtccattgcaaattatccccacca |
28938982 |
T |
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| Q |
228 |
aacaacatgtaccagcagatgctatctgtgg |
258 |
Q |
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||||||| ||||| || ||||| || ||||| |
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| T |
28938983 |
aacaacaagtacctgctgatgcaatatgtgg |
28939013 |
T |
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