View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_45 (Length: 271)

Name: NF14234_high_45
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_45
NF14234_high_45
[»] chr1 (14 HSPs)
chr1 (1-266)||(18409897-18410157)
chr1 (1-266)||(18429022-18429282)
chr1 (105-167)||(18437812-18437874)
chr1 (105-167)||(18448670-18448732)
chr1 (105-167)||(18453763-18453825)
chr1 (105-158)||(18423547-18423600)
chr1 (90-145)||(18427174-18427229)
chr1 (189-218)||(18437882-18437911)
chr1 (189-218)||(18448740-18448769)
chr1 (189-218)||(18453833-18453862)
chr1 (85-144)||(18408135-18408195)
chr1 (6-62)||(18437711-18437767)
chr1 (6-62)||(18448569-18448625)
chr1 (6-62)||(18453662-18453718)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 18409897 - 18410157
Alignment:
Q  1 gcaacgactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccccaaatgtgttttaaggtatgtacacaatcctgttttat 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  18409897 gcaacgactaataatatactacaaaaatacatgggacaactcaactataaaacaggagtccccaaatgtgttttaaggtatgtacacaatcctgttttat 18409996  T
Q  101 aggcacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataataagagcaaggaatgcacacatgcctcttc 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||    
T  18409997 aggtacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataata-----atggaatgcacacatgcctcttc 18410091  T
Q  201 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccctatgctact 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18410092 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccatatgatact 18410157  T

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Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 18429022 - 18429282
Alignment:
Q  1 gcaacgactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccccaaatgtgttttaaggtatgtacacaatcctgttttat 100  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  18429022 gcaacgactagtgatatattacaaaaatacatggcacaactcaactataaaacaggagtccccaaatgtggtttaaggtatgtacacaatcctgttttat 18429121  T
Q  101 aggcacatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataataataagagcaaggaatgcacacatgcctcttc 200  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||||||||||||||||||||    
T  18429122 aggtacatgtttgtctatattgtttacacactttcgatgtgggacaacttctgaactatcacaataataata-----atggaatgcacacatgcctcttc 18429216  T
Q  201 cttcctctttaatcactcggccattggataacaaaacataactgttgccgccaaccctatgctact 266  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  18429217 cttcctctttaatcacttggccattggataacaaaacataactgttgccgccaaccatatgatact 18429282  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18437812 - 18437874
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18437812 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18437874  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18448670 - 18448732
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18448670 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18448732  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 18453763 - 18453825
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaactatcacaataa 167  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  18453763 acatgtttgtctacgttgtttacacactttcgatgtgggacaacttctgaactaccataataa 18453825  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 18423547 - 18423600
Alignment:
Q  105 acatgtttgtctatgttgtttacacactttcgatgtgggacaacttctgaacta 158  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  18423547 acatgtttgtctacgttgtttacacactttcaatgtgggacaacttctgaacta 18423600  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 18427174 - 18427229
Alignment:
Q  90 tcctgttttataggcacatgtttgtctatgttgtttacacactttcgatgtgggac 145  Q
    |||| ||||||||| |||||| |||  ||||||| |||||||||||||||||||||    
T  18427174 tcctattttataggtacatgtatgttcatgttgtctacacactttcgatgtgggac 18427229  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18437882 - 18437911
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18437882 acatgcctcttccttcctctttaatcactc 18437911  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18448740 - 18448769
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18448740 acatgcctcttccttcctctttaatcactc 18448769  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 218
Target Start/End: Original strand, 18453833 - 18453862
Alignment:
Q  189 acatgcctcttccttcctctttaatcactc 218  Q
    ||||||||||||||||||||||||||||||    
T  18453833 acatgcctcttccttcctctttaatcactc 18453862  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 18408135 - 18408195
Alignment:
Q  85 cacaatcctgttttata-ggcacatgtttgtctatgttgtttacacactttcgatgtggga 144  Q
    |||||| || ||||||| || |||||| ||||||| |||| ||||||||||||||||||||    
T  18408135 cacaatactcttttataaggtacatgtatgtctatattgtctacacactttcgatgtggga 18408195  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18437711 - 18437767
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18437711 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18437767  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18448569 - 18448625
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18448569 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18448625  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 18453662 - 18453718
Alignment:
Q  6 gactaatgatatactacaaaaatacatgggacaactcaactataaaacaagggtccc 62  Q
    ||||| |||||||| || | ||| |||||||||||| |||||||||||| |||||||    
T  18453662 gactagtgatataccaccagaattcatgggacaacttaactataaaacatgggtccc 18453718  T

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