View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_49 (Length: 261)
Name: NF14234_high_49
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 10418303 - 10418441
Alignment:
| Q |
100 |
agataagagggtttccacacaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaaggagaaaaatgaaatat |
199 |
Q |
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| T |
10418303 |
agataagagggtttccacgcaagtcaagctatcatcgatcattccaggaaggctgagagcaaaacgacactgtggaaagtaaaggagaaaaatgaaatat |
10418402 |
T |
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| Q |
200 |
agctacttttccacataccgcggaccaaaatgtatattt |
238 |
Q |
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| T |
10418403 |
agctacttttccacggaccacgaaccaaaaagtatattt |
10418441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 10414631 - 10414682
Alignment:
| Q |
136 |
gatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaaggaga |
187 |
Q |
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| T |
10414631 |
gatcattccaggaaggaagagagcaaaacgacagtgtgcaaaataaatgaga |
10414682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 35369815 - 35369726
Alignment:
| Q |
122 |
gtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagta----aaggagaaaaatgaaatatagctactt |
207 |
Q |
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| T |
35369815 |
gtcaagctatcatcgatcattccagtaaggcagagagcaaaacgacagtgtggaaattaaattaaggagagaaatgaaatatagctactt |
35369726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 71
Target Start/End: Complemental strand, 35369866 - 35369831
Alignment:
| Q |
36 |
ttacatgcttaatacgatatttatttaaagagtgaa |
71 |
Q |
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| T |
35369866 |
ttacttgcttaatacgatatttatttaaagagtgaa |
35369831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 30665964 - 30665904
Alignment:
| Q |
125 |
aagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga |
185 |
Q |
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| T |
30665964 |
aagctatcaaggatcattcgaggaaggcagagagtaaaacgacagtgcggaaaataaagga |
30665904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30620146 - 30620079
Alignment:
| Q |
118 |
acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga |
185 |
Q |
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| T |
30620146 |
acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga |
30620079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30622767 - 30622700
Alignment:
| Q |
118 |
acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga |
185 |
Q |
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| T |
30622767 |
acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga |
30622700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 185
Target Start/End: Complemental strand, 30625388 - 30625321
Alignment:
| Q |
118 |
acaagtcaagctatcatcgatcattccaggaaggcagagagcaaaacgacagtgtggaaagtaaagga |
185 |
Q |
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| T |
30625388 |
acaagacaagctatcaaggatcattcgaggaaggcagagagcaaaaggaaagtgcggaaaataaagga |
30625321 |
T |
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