View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_5 (Length: 528)
Name: NF14234_high_5
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 45792262 - 45791768
Alignment:
| Q |
20 |
cattgtgatctttgccaagattacacatatgtctttatgctttattcaataagtaacaagaaagcccatatatgattcaggattgtatagatttctcaga |
119 |
Q |
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| T |
45792262 |
cattgtgatctttgccaagattacacatatgtcttaatgcattattcaataagtaacaagaaagcccatatatgattcaggattgtatagatttctcaga |
45792163 |
T |
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| Q |
120 |
cttcaaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtata |
219 |
Q |
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| T |
45792162 |
cttcaaagaccaaatagtccttgtattggatttatcttggtcagacaaatgtcaaataacaaaatttatgcgaaaaccaaaatactcaagcaatagtata |
45792063 |
T |
|
| Q |
220 |
aactactgacggtgcaacatgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacgagtggacacaactcatacctcaatttt |
319 |
Q |
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||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45792062 |
aactacttacggtgcgatatgattattcacaagtataaaatatattctccaaaacttcctctctttcatgacatgtggacacaactcatacctcaatttt |
45791963 |
T |
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| Q |
320 |
gaaatttcctgcaacaaagaataaactgaattgtgaaaggctagttttcaaaaatacctattgac--aaaagataagtaaaacacagaaggaagaataac |
417 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45791962 |
gaaatttcctgcaacaaaaaataaactgaattgtgaaaggctagttttcaaaaatacctattgacaaaaaaaataagtaaaacacagaaggaagaataac |
45791863 |
T |
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| Q |
418 |
atgtatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45791862 |
atgtatacataaaacaaattatacaccaaggtgtcagattttactttcttcatgctaggttaacccaaaaataggcagtgctttttgaccctttg |
45791768 |
T |
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