View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_55 (Length: 250)
Name: NF14234_high_55
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 121 - 241
Target Start/End: Complemental strand, 32901851 - 32901731
Alignment:
| Q |
121 |
tcaatcatcattgcatgaaaacacgtttgcgtgtagcgtacatttgagaaggtactatatattgcatgcttgttgaatgcataaccaaaaacattgttat |
220 |
Q |
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| T |
32901851 |
tcaatcatcattgcatgaaaacacgtttgcgtgtagcgtacatttgagaaggtactatatattgcatgcttgttgaatgcataaccaaaaaccttgttat |
32901752 |
T |
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| Q |
221 |
aattaagacatgacttcatct |
241 |
Q |
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| T |
32901751 |
aattaagacatgacttcatct |
32901731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 32902680 - 32902552
Alignment:
| Q |
1 |
cgcacaaattagacatttatttgttgtcgaagttgagatacttctttcctagccaaaaatgaccataaataacatcctactccacgttagtgagattgtt |
100 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32902680 |
cgcacaaattaaacatttatttgttgtcgaacttgagatacttctttcctagccaaaaatgaccataaataacatcctactccacgttagtgagattgtt |
32902581 |
T |
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| Q |
101 |
cctttgtatataaaattgaatcaatcatca |
130 |
Q |
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| T |
32902580 |
ccttt-tatataaaattgaatcaatcatca |
32902552 |
T |
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