View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14234_high_60 (Length: 233)
Name: NF14234_high_60
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 11827639 - 11827860
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggtcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
11827639 |
ttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggactggtgaagggtttcttatcaatccagaacaacaatttggtcat |
11827738 |
T |
|
| Q |
101 |
gcttgtttcgaagacttcgttcctctggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaac---------aact |
191 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
11827739 |
gcttgtttcgaagactttgttcctttggttttccatcaagcggaagaagaaagtgaccaccagaagtactgcggtgttgtgaggaacaacatgaacaact |
11827838 |
T |
|
| Q |
192 |
acttatatagaatgaatcggtt |
213 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11827839 |
acttatatagaatgaatcggtt |
11827860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 11859774 - 11859962
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggtcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
11859774 |
ttcattgtttccagaagattatttgattgatgcagagagattgattcaactctggacggctgaagggtttcttatcaatccagaacaacaatttggtcaa |
11859873 |
T |
|
| Q |
101 |
gcttgtttcgaagacttcgttcctctggttttccataaagcgaaaaaagaaagtgaccaccatcagtactgcggtgttgtgaggaacaa |
189 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||| ||||| || ||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
11859874 |
gcttgtttcaaagactttgttcctttggttttccatcaagcggaagaagaaagtgactacctccggtactgcggtgttgtgaggaacaa |
11859962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 11902750 - 11902616
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttcttgtcaacccagaacaacaatttggtcaa |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| || ||| ||||||||||| ||| | |
|
|
| T |
11902750 |
ttcattgtttccaagagattatttgattgatgctgagagattaattgaactctggactgctgaaggatttctcaccattccacaacaacaattttgtcga |
11902651 |
T |
|
| Q |
101 |
gcttgtttcgaagacttcgttcctctggttttcca |
135 |
Q |
| |
|
|||||||| | ||||| ||||| |||||||||| |
|
|
| T |
11902650 |
ccttgtttcaatgactttgttccgttggttttcca |
11902616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12038533 - 12038604
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttct |
72 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
12038533 |
ttcattgtttccagaagattatttaattgatgccgagagattaattcaactttggacggctgaaggatttct |
12038604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11731443 - 11731508
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagg |
66 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||||||||||||||| ||| ||||||||| |
|
|
| T |
11731443 |
ttcattgtttccagaacatcatttgattgatgccgagagattaattcaactttggtttgctgaagg |
11731508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 12038627 - 12038679
Alignment:
| Q |
80 |
ccagaacaacaatttggtcaagcttgtttcgaagacttcgttcctctggtttt |
132 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||| |||||| ||||||| |
|
|
| T |
12038627 |
ccagaacaacaatttggtcgagcttgtttcaacgactttgttcctttggtttt |
12038679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11975044 - 11974974
Alignment:
| Q |
1 |
ttcattgtttccagaagattatttgattgatgcagagagattaattcaactctggactgctgaagggtttc |
71 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||||||||| |||| ||| || ||||| |||| |
|
|
| T |
11975044 |
ttcattgtttcctcaagatcatttgattgatgtcgagagattaattcatctcttgacagcagaaggatttc |
11974974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University