View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_64 (Length: 217)
Name: NF14234_high_64
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 9474683 - 9474793
Alignment:
| Q |
17 |
atacaattaacaagcttgtttcttaatcaaaactctacgtctagtctaatgatcaactaattcaaggactaaactcattgtccactaaccgagagtttaa |
116 |
Q |
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| T |
9474683 |
atacaattaacaagcttgtttcttaatcaaaactctacgtctagtctaatgatcaactaattcaaggactaaactcattgtccactaaccgagagtttaa |
9474782 |
T |
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| Q |
117 |
tcaaagtagaa |
127 |
Q |
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||||| ||||| |
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| T |
9474783 |
tcaaactagaa |
9474793 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 9475008 - 9475070
Alignment:
| Q |
138 |
tatcacaaaagactttgactagggcaaagacaattatgtccttacattcatgatccttctgat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9475008 |
tatcacaaaagactttgactcgggcaaagacaattatatccttacattcatgatccttctgat |
9475070 |
T |
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