View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_high_8 (Length: 497)

Name: NF14234_high_8
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_high_8
NF14234_high_8
[»] chr5 (5 HSPs)
chr5 (18-484)||(11721966-11722434)
chr5 (296-469)||(5782944-5783117)
chr5 (334-476)||(19070419-19070561)
chr5 (418-471)||(13644674-13644727)
chr5 (405-471)||(35339943-35340009)
[»] chr4 (13 HSPs)
chr4 (278-484)||(10674505-10674710)
chr4 (278-484)||(10888145-10888350)
chr4 (278-484)||(10911215-10911420)
chr4 (278-484)||(10697446-10697651)
chr4 (151-277)||(10698250-10698376)
chr4 (151-277)||(10912017-10912143)
chr4 (280-471)||(8668842-8669033)
chr4 (151-277)||(10673782-10673908)
chr4 (151-277)||(10887422-10887548)
chr4 (295-476)||(33042373-33042553)
chr4 (334-477)||(7185029-7185172)
chr4 (411-471)||(15443302-15443362)
chr4 (411-471)||(17939118-17939178)
[»] chr8 (7 HSPs)
chr8 (278-484)||(21591103-21591309)
chr8 (278-484)||(14411280-14411486)
chr8 (282-484)||(23599861-23600064)
chr8 (153-259)||(14410598-14410704)
chr8 (153-262)||(21590413-21590522)
chr8 (341-476)||(17458458-17458593)
chr8 (154-259)||(23599164-23599269)
[»] chr7 (4 HSPs)
chr7 (279-484)||(3729481-3729686)
chr7 (278-434)||(17181348-17181504)
chr7 (153-257)||(17180664-17180768)
chr7 (412-469)||(20942618-20942675)
[»] scaffold0363 (2 HSPs)
scaffold0363 (278-484)||(7225-7431)
scaffold0363 (153-259)||(8007-8113)
[»] chr6 (7 HSPs)
chr6 (278-484)||(13734408-13734615)
chr6 (280-476)||(11777226-11777422)
chr6 (183-260)||(32008906-32008983)
chr6 (319-471)||(33312350-33312502)
chr6 (167-234)||(6857097-6857164)
chr6 (418-467)||(12434090-12434139)
chr6 (319-471)||(16975-17127)
[»] scaffold0063 (1 HSPs)
scaffold0063 (281-464)||(59302-59485)
[»] chr2 (6 HSPs)
chr2 (280-470)||(5114683-5114873)
chr2 (153-259)||(22176318-22176424)
chr2 (334-469)||(12100894-12101029)
chr2 (412-469)||(25976821-25976878)
chr2 (319-471)||(3867795-3867947)
chr2 (214-258)||(14434981-14435025)
[»] chr1 (4 HSPs)
chr1 (278-468)||(10425587-10425777)
chr1 (280-465)||(13311307-13311492)
chr1 (189-258)||(18706335-18706404)
chr1 (343-452)||(11781182-11781291)
[»] chr3 (4 HSPs)
chr3 (319-467)||(20972127-20972275)
chr3 (286-466)||(19829984-19830164)
chr3 (283-429)||(16313028-16313174)
chr3 (283-429)||(18494022-18494168)
[»] scaffold0238 (1 HSPs)
scaffold0238 (334-471)||(1696-1833)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 11721966 - 11722434
Alignment:
Q  18 ggagtgaagtcgtaacaataaccccaaaggtgatttatttgaaaatatggaaaatgttatttttgagaagtttgagaatgggacataacaaagaatggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11721966 ggagtgaagtcgtaacaataaccccaaaggtgatttatttgaaaatatggaaaatgttatttttgagaagtttgagaatgggacataacaaagaatggtg 11722065  T
Q  118 ctcctgattttatgaagtctgtctcagtaaacaagcgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatggg 217  Q
    |||||  |||| |||||||||||||||||||  | ||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||    
T  11722066 ctcctatttttctgaagtctgtctcagtaaaacaacgatttctcacttgttaaccgttggatcaggctgatttttggaccgcaggttcgaaacacatggg 11722165  T
Q  218 tctaccttttcaccgttcggat--cgttgaaacaaggtctgagttgatagcaatcggccacggtcaggaagagtatcaaaggggactagaggattgcaaa 315  Q
    |||||||||||||| |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11722166 tctaccttttcacctttcggatatcgttgaaacaaggtctgagttgatataaatcggccacggtcaggaagagtatcaaaggggattagaggattgcaaa 11722265  T
Q  316 aatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcag 415  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11722266 aatgcgttgagggcgcgtttgactcttaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacattggcag 11722365  T
Q  416 ggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgaccttagaa 484  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11722366 ggtggaaaatggtgcctctaggcaaaggctattatgattttcactttgactcggcgcatgaccttagaa 11722434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 296 - 469
Target Start/End: Complemental strand, 5783117 - 5782944
Alignment:
Q  296 ggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaa 395  Q
    ||||| |||| || ||||| |||||||| ||||| || |||||| |||||||||||||||| || || |||||||||||| |||| | |||||| |||||    
T  5783117 ggggagtagaagaatgcaagaatgtgttaagggctcgcttgactcttaacaagggagataagccgtattttgcacgtgatttaagtaccaaaataggaaa 5783018  T
Q  396 gctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcgg 469  Q
    ||  || ||||||||||| |  ||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  5783017 gcattggaaaacatcggcggcctggaaaatggtgcctcttggcaaaggttactatgactttcactttgactcgg 5782944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 334 - 476
Target Start/End: Complemental strand, 19070561 - 19070419
Alignment:
Q  334 ttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctc 433  Q
    |||||| |||||||||| ||||| || || | |||||||||| |||| | |||||| |||||||  || ||||||||||| |  |||||||||| |||||    
T  19070561 ttgactcttaacaagggggataagccgtattctgcacgtgatttaagtaccaaaataggaaagcattggaaaacatcggcggcctggaaaatggcgcctc 19070462  T
Q  434 taggcaaaggctattatgactttcactttgactcggcgcatga 476  Q
    | |||||||| || |||||||||||||||||||||||| ||||    
T  19070461 ttggcaaaggttactatgactttcactttgactcggcggatga 19070419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 13644727 - 13644674
Alignment:
Q  418 tggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  13644727 tggaaaatggtgcctcttggcaaggggtattatgactttcattttgactcggcg 13644674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 471
Target Start/End: Original strand, 35339943 - 35340009
Alignment:
Q  405 aacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||| ||||||| ||||||||||||||||| || || || |||||||||||||| || || ||||||    
T  35339943 aacagcggcaggttggaaaatggtgcctctcggtaaggggtattatgactttcatttcgaatcggcg 35340009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 10674505 - 10674710
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10674505 gtcacgaagagcatcaaaggggactagaggattgcaaaaatgcgttgagggcgcgtttgactcttaacaagggagataaaccatactttgcacgtgatct 10674604  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10674605 aagcaacaaaattggaaagcaatggaaaaca-cggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgaatcggcggatgac 10674703  T
Q  478 cttagaa 484  Q
    |||||||    
T  10674704 cttagaa 10674710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 10888145 - 10888350
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10888145 gtcacgaagagcatcaaaggggactagaggattgcaaaaatgcgttgagggcgcgtttgactcttaacaagggagataaaccatactttgcacgtgatct 10888244  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10888245 aagcaacaaaattggaaagcaatggaaaaca-cggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgaatcggcggatgac 10888343  T
Q  478 cttagaa 484  Q
    |||||||    
T  10888344 cttagaa 10888350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 278 - 484
Target Start/End: Complemental strand, 10911420 - 10911215
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10911420 gtcacgaagagcatcaaaggggactagaggattgcaaaaatgcgttgagggcgcgtttgactcttaacaagggagataaaccatactttgcacgtgatct 10911321  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10911320 aagcaacaaaattggaaagcaatggaaaaca-cggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgaatcggcggatgac 10911222  T
Q  478 cttagaa 484  Q
    |||||||    
T  10911221 cttagaa 10911215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 278 - 484
Target Start/End: Complemental strand, 10697651 - 10697446
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  10697651 gtcacgaagagtatcaaaagggagtagaggattgcacaaatgtgttgagggcgcgtttgactcttaacaagggagataaaccatactttgcacatgatct 10697552  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    ||||||  |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  10697551 aagcaaataaattggaaagctatggaaaaca-cggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgaatcggcggatgac 10697453  T
Q  478 cttagaa 484  Q
    |||||||    
T  10697452 cttagaa 10697446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 10698376 - 10698250
Alignment:
Q  151 agcgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaa 250  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| || |||||||    
T  10698376 agcgatttctcacttgttaactcttggatcgggctgatttttggacagcaggttcacaacacctgggtctaccttttcaccgtttggattgtcgaaacaa 10698277  T
Q  251 ggtctgagttgatagcaatcggccacg 277  Q
    |||||||||||| || |||||||||||    
T  10698276 ggtctgagttgagagaaatcggccacg 10698250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 151 - 277
Target Start/End: Complemental strand, 10912143 - 10912017
Alignment:
Q  151 agcgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaa 250  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| || |||||||    
T  10912143 agcgatttctcacttgttaactcttggatcgggctgatttttggacagcaggttcacaacacctgggtctaccttttcaccgtttggattgtcgaaacaa 10912044  T
Q  251 ggtctgagttgatagcaatcggccacg 277  Q
    |||||||||||| || |||||||||||    
T  10912043 ggtctgagttgagagaaatcggccacg 10912017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 280 - 471
Target Start/End: Complemental strand, 8669033 - 8668842
Alignment:
Q  280 caggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaa 379  Q
    ||||||||||| || | |||| | || || ||||| || | ||| ||||| ||||||||| |||||||||||||||| ||||||| |||||||||  |||    
T  8669033 caggaagagtaccatatgggagtggaagaatgcaagaaggcgttaagggctcgtttgactcttaacaagggagataagccatactctgcacgtgacttaa 8668934  T
Q  380 gcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||| ||||| | |||||| || ||||||||||| || ||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||    
T  8668933 gcaataaaatcgaaaagctttggaaaacatcggcgggctggaaaatggtgcctctcggcaaaggatactatgattttcattttgactcggcg 8668842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 10673782 - 10673908
Alignment:
Q  151 agcgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaa 250  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||  |||||||||||||| |||||  ||||||| |||||||    
T  10673782 agcgatctctcacttgttaactgttggatcgggctgatttttggacaacaggttcacaacatctgggtctaccttttgaccgtctggatcgtcgaaacaa 10673881  T
Q  251 ggtctgagttgatagcaatcggccacg 277  Q
    |||||||||||| |  |||||||||||    
T  10673882 ggtctgagttgagaaaaatcggccacg 10673908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 151 - 277
Target Start/End: Original strand, 10887422 - 10887548
Alignment:
Q  151 agcgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaa 250  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||  |||||||||||||| |||||  ||||||| |||||||    
T  10887422 agcgatctctcacttgttaactgttggatcgggctgatttttggacaacaggttcacaacatctgggtctaccttttgaccgtctggatcgtcgaaacaa 10887521  T
Q  251 ggtctgagttgatagcaatcggccacg 277  Q
    |||||||||||| |  |||||||||||    
T  10887522 ggtctgagttgagaaaaatcggccacg 10887548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 476
Target Start/End: Complemental strand, 33042553 - 33042373
Alignment:
Q  295 aggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaa 394  Q
    |||||| ||||||| ||||| |||| ||| ||||| || |||||| |||||||||| ||||| || || | ||||||||| ||||  | |||||| ||||    
T  33042553 aggggagtagaggaatgcaagaatgcgttaagggctcgattgactcttaacaaggg-gataagccgtattctgcacgtgacctaaataccaaaatcggaa 33042455  T
Q  395 agctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatga 476  Q
    |||| || |||||||||||  | ||||||||||||||||| |||||||| || |||||||||||||||||||||||| ||||    
T  33042454 agctttggaaaacatcggcgagatggaaaatggtgcctctcggcaaaggttactatgactttcactttgactcggcggatga 33042373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 334 - 477
Target Start/End: Original strand, 7185029 - 7185172
Alignment:
Q  334 ttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctc 433  Q
    |||||| | ||||| || || ||||| |||| ||||||||| || || |  |||||||||||  | || || ||| ||||| | ||||||||||||||||    
T  7185029 ttgactctcaacaaaggggacaaaccttactctgcacgtgaactcagtattaaaattggaaaaatttggaagacaacggcaagctggaaaatggtgcctc 7185128  T
Q  434 taggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    | || || || ||||||||||||||||||||||||||| |||||    
T  7185129 ttggtaagggttattatgactttcactttgactcggcggatgac 7185172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 15443362 - 15443302
Alignment:
Q  411 ggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||||| ||||||||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  15443362 ggcaggatggaaaatggtgcctcttggcaaggggtattatgactttcattttgactcggcg 15443302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 17939118 - 17939178
Alignment:
Q  411 ggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||||| |||||||||||| |||| ||||| || |||||||||||||| ||||||||||||    
T  17939118 ggcaggatggaaaatggtgtctcttggcaaggggtattatgactttcattttgactcggcg 17939178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 21591103 - 21591309
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||  ||||||| ||||| |||||||| ||||||||||||||    
T  21591103 gtcaggaagagtatcataggggactagaggattgcaagaatgtgttgagggctcgtttgacccttaacaaaggagacaaaccatattttgcacgtgatct 21591202  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21591203 aagcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcggatgac 21591302  T
Q  478 cttagaa 484  Q
    |||||||    
T  21591303 cttagaa 21591309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 14411280 - 14411486
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||  ||||||| ||||| |||||||| ||||||||||||||    
T  14411280 gtcaggaagagtatcataggggactagaggattgcaagaatgtgttgagggcacgtttgacccttaacaaaggagacaaaccatattttgcacgtgatct 14411379  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    ||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  14411380 aagcaacaaaattggcaaggtatggaaaacatcggcaggatggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcagatgac 14411479  T
Q  478 cttagaa 484  Q
    |||||||    
T  14411480 cttagaa 14411486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 282 - 484
Target Start/End: Original strand, 23599861 - 23600064
Alignment:
Q  282 ggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagc 381  Q
    |||||||||||| | |||||||||||||| |||  || |||||||||||||||||||  ||||||| ||||| |||||||| ||||||||||||||||||    
T  23599861 ggaagagtatcatatgggactagaggattacaagtatatgttgagggcgcgtttgacccttaacaaaggagacaaaccatattttgcacgtgatctaagc 23599960  T
Q  382 aacaaaattggaaagctatgaaaaacatcggc-agggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgacctt 480  Q
    ||||||||||||||  |||| ||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  23599961 aacaaaattggaaacgtatggaaaacatcgacaaggatggaaaatggtgcctctagacaaaggctattatgactttcactttgactcggcggatgacctt 23600060  T
Q  481 agaa 484  Q
    ||||    
T  23600061 agaa 23600064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 14410598 - 14410704
Alignment:
Q  153 cgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaagg 252  Q
    |||||||||| | ||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  14410598 cgatttctcagtcgttaaccgtcggatcgggctgatttttggacatcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaagg 14410697  T
Q  253 tctgagt 259  Q
    |||||||    
T  14410698 tctgagt 14410704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 153 - 262
Target Start/End: Original strand, 21590413 - 21590522
Alignment:
Q  153 cgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaagg 252  Q
    |||||||||| | ||||||||| |||||| ||| ||||||||||| ||||| |||| ||| ||||||||| ||||||||||||||||||| |||||||||    
T  21590413 cgatttctcagtcgttaaccgtcggatcgggctaatttttggacatcaggtgcgcagcacctgggtctacgttttcaccgttcggatcgtcgaaacaagg 21590512  T
Q  253 tctgagttga 262  Q
    ||||||||||    
T  21590513 tctgagttga 21590522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 341 - 476
Target Start/End: Original strand, 17458458 - 17458593
Alignment:
Q  341 ttaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaa 440  Q
    |||||||||| ||||| || || | |||||| || ||||| | |||||| |||||||| ||  |||||| ||| || ||||||||||||||||| |||||    
T  17458458 ttaacaagggggataagccgtattctgcacgagacctaagtaccaaaataggaaagctttgggaaacattggcgggctggaaaatggtgcctctcggcaa 17458557  T
Q  441 aggctattatgactttcactttgactcggcgcatga 476  Q
    ||| || |||||||| |||||||||| |||| ||||    
T  17458558 aggttactatgacttccactttgacttggcggatga 17458593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 23599164 - 23599269
Alignment:
Q  154 gatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaaggt 253  Q
    ||||||||| | |||||||||  ||||| ||| ||||||||||| | ||||||||| || || |||||  |||| || ||||||||||| ||||||||||    
T  23599164 gatttctcagtcgttaaccgtcagatcgggctaatttttggacatcgggttcgcaaaacctgagtctatgtttttactgttcggatcgtcgaaacaaggt 23599263  T
Q  254 ctgagt 259  Q
    ||||||    
T  23599264 ctgagt 23599269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 7e-84; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 279 - 484
Target Start/End: Complemental strand, 3729686 - 3729481
Alignment:
Q  279 tcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatcta 378  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||  ||||||| ||||| |||||||| |||||||||||||||    
T  3729686 tcaggaagagtatcataggggactagaggattgcaagaatgtgctgagggcgcgtttgacccttaacaaaggagacaaaccatattttgcacgtgatcta 3729587  T
Q  379 agcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgacc 478  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3729586 agcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcggatgacc 3729487  T
Q  479 ttagaa 484  Q
    ||||||    
T  3729486 ttagaa 3729481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 278 - 434
Target Start/End: Original strand, 17181348 - 17181504
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||| |||||||| ||||||||||||||    
T  17181348 gtcaggaagagtatcataggggactagaggattgcaagaatgtgttgagggcgcgtttgacccttaacaaaggagacaaaccatattttgcacgtgatct 17181447  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctct 434  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  17181448 aagcaacaaaattggaaaggtatggaaaacatcggcaggatggaaaatggtgcctct 17181504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 17180664 - 17180768
Alignment:
Q  153 cgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaagg 252  Q
    |||||||||  | ||||||||| |||||| |||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  17180664 cgatttctcggtcgttaaccgtcggatcgggctgatgtttggacatcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaagg 17180763  T
Q  253 tctga 257  Q
    |||||    
T  17180764 tctga 17180768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 20942675 - 20942618
Alignment:
Q  412 gcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcgg 469  Q
    ||||| ||||||||| |||||||||| || || | |||||| ||||||||||||||||    
T  20942675 gcaggttggaaaatgctgcctctaggaaagggtttttatgattttcactttgactcgg 20942618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 278 - 484
Target Start/End: Complemental strand, 7431 - 7225
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||  ||||||| ||||| |||||||| ||||||||||||||    
T  7431 gtcaggaagagtatcataggggactagaggattgcaagaatgtgttgagggcacgtttgacccttaacaaaggagacaaaccatattttgcacgtgatct 7332  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatgac 477  Q
    ||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  7331 aagcaacaaaattggcaaggtatggaaaacatcggcaggatggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcagatgac 7232  T
Q  478 cttagaa 484  Q
    |||||||    
T  7231 cttagaa 7225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 8113 - 8007
Alignment:
Q  153 cgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaagg 252  Q
    |||||||||| | ||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||    
T  8113 cgatttctcagtcgttaaccgtcggatcgggctgatttttggacatcaggttcgcaacacctgggtctacgttttcaccgttcggatcgtcgaaacaagg 8014  T
Q  253 tctgagt 259  Q
    |||||||    
T  8013 tctgagt 8007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 278 - 484
Target Start/End: Original strand, 13734408 - 13734615
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaag-ggagataaaccatactttgcacgtgatc 376  Q
    ||||||| |||||||| || |||||| | || ||||| |||| ||||||||||||||||||  |||||||  ||| | |||||||| ||||||||| |||    
T  13734408 gtcaggaggagtatcatagaggactacaagactgcaataatgagttgagggcgcgtttgacccttaacaaaaggatacaaaccatattttgcacgtcatc 13734507  T
Q  377 taagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatga 476  Q
    |||||| ||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| || ||||    
T  13734508 taagcatcaatattggaaagctatggaaaacatcggcaggatggaaaatggtgactctaggcaaagactattatgactttcactttgactcgacggatga 13734607  T
Q  477 ccttagaa 484  Q
    ||||||||    
T  13734608 ccttagaa 13734615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 280 - 476
Target Start/End: Complemental strand, 11777422 - 11777226
Alignment:
Q  280 caggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaa 379  Q
    ||||| ||||| || |||||| |||| || ||||  |||| ||| ||||| || |||||| |||||||||| ||||| || |||| |||| ||||| |||    
T  11777422 caggacgagtaccataggggaatagaagaatgcaggaatgcgttaagggctcgcttgactcttaacaagggggataagccgtactctgcaagtgatttaa 11777323  T
Q  380 gcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcgcatga 476  Q
    | | |||||| |||||||  || ||||||||||| |  ||||||||||||||||| | |||||| || |||||||||||||||||| ||||| ||||    
T  11777322 gtaccaaaataggaaagcattggaaaacatcggcggtctggaaaatggtgcctctcgacaaaggttactatgactttcactttgacacggcggatga 11777226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 32008906 - 32008983
Alignment:
Q  183 gctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaaggtctgagtt 260  Q
    ||||||||||||| | |||||| | ||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  32008906 gctgatttttggagaacaggtttgtaacacctgggtctaccttttcaccgtttggatcgtcgaaacaaggtttgagtt 32008983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 471
Target Start/End: Original strand, 33312350 - 33312502
Alignment:
Q  319 gtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggt 418  Q
    ||||| ||||| || ||| || ||||||| ||||| ||||| || |||||||||||||| || |  |||||||  |||   || || |||  |||||| |    
T  33312350 gtgttaagggctcggttggctcttaacaaaggagacaaaccttattttgcacgtgatcttagtattaaaattgataagacttggaagacaaaggcaggat 33312449  T
Q  419 ggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||||||    
T  33312450 ggaaaatggtgcctcttggcaagggttattatgactttcattttgactcggcg 33312502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 6857097 - 6857164
Alignment:
Q  167 ttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgtt 234  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||| || ||||||||||||||||||    
T  6857097 ttaaccgttggatcggggtgatttttggagagaaggtttgcaacacctgtgtctaccttttcaccgtt 6857164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 467
Target Start/End: Original strand, 12434090 - 12434139
Alignment:
Q  418 tggaaaatggtgcctctaggcaaaggctattatgactttcactttgactc 467  Q
    ||||||||||||||||| ||||| || |||||||||||||| ||||||||    
T  12434090 tggaaaatggtgcctcttggcaagggttattatgactttcattttgactc 12434139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 471
Target Start/End: Complemental strand, 17127 - 16975
Alignment:
Q  319 gtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggt 418  Q
    ||||| ||||| || |||||| ||||| | || || ||||| |||| ||||| || ||| || |  |||||||||||  | || || ||| ||||| | |    
T  17127 gtgttaagggctcgattgactcttaacgaaggggacaaaccttactctgcacatgttctcagtattaaaattggaaaaatttggaagacaacggcaagct 17028  T
Q  419 ggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
    |||||||||||| ||| || ||  | |||||||||||||||||||||||||||    
T  17027 ggaaaatggtgcttcttggtaagtggtattatgactttcactttgactcggcg 16975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 281 - 464
Target Start/End: Original strand, 59302 - 59485
Alignment:
Q  281 aggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaag 380  Q
    ||||||| ||||| | ||||| |||||||||||| |||| ||| ||||||| ||||||  |||||||  ||||||||||||| | ||||||||||| |||    
T  59302 aggaagaatatcataagggaccagaggattgcaagaatgcgttaagggcgcatttgacccttaacaaaagagataaaccatattctgcacgtgatcaaag 59401  T
Q  381 caacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttga 464  Q
    ||||||||||| ||||||||| |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  59402 caacaaaattgcaaagctatggaaaacatcgttaggatggaaaatggtgcctctaggcaaaggctattatgactttcactttga 59485  T

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Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 280 - 470
Target Start/End: Original strand, 5114683 - 5114873
Alignment:
Q  280 caggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaa 379  Q
    ||||||||||| || |||||  |||| || ||||| |||| ||| ||||  |||||| || |||||||||||||||| ||||||| ||||||||   |||    
T  5114683 caggaagagtaccataggggtgtagatgaatgcaagaatgcgttaagggttcgtttgtctcttaacaagggagataagccatactctgcacgtgccttaa 5114782  T
Q  380 gcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggc 470  Q
    || | ||||| |||||||| || ||||||| ||| || ||||||||||||||||| |||||||| || ||||||||||| |||||||||||    
T  5114783 gcgataaaatcggaaagctttggaaaacattggctggttggaaaatggtgcctctcggcaaaggttactatgactttcattttgactcggc 5114873  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 22176424 - 22176318
Alignment:
Q  153 cgatttctcacttgttaaccgttggatcgagctgatttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaagg 252  Q
    |||||||||| | ||||||||| |||||| ||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||||||||| ||||||| |    
T  22176424 cgatttctcagtcgttaaccgtcggatcgggctgatttttggacatcaggttcccaacacttgggtctacgttttcaccgttcggatcgtcgaaacaaag 22176325  T
Q  253 tctgagt 259  Q
    |||||||    
T  22176324 tctgagt 22176318  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 334 - 469
Target Start/End: Original strand, 12100894 - 12101029
Alignment:
Q  334 ttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctc 433  Q
    |||||| | |||||||| || |||||||| | ||||||||| ||||||| |||| | |||||||| || ||||||  |||||  ||||||||||| |||     
T  12100894 ttgactctaaacaagggtgagaaaccatattctgcacgtgacctaagcaccaaattgggaaagctttggaaaacaatggcagcatggaaaatggttcctt 12100993  T
Q  434 taggcaaaggctattatgactttcactttgactcgg 469  Q
    |||||||||| || ||||| ||||| ||||| ||||    
T  12100994 taggcaaaggatactatgattttcattttgattcgg 12101029  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 469
Target Start/End: Complemental strand, 25976878 - 25976821
Alignment:
Q  412 gcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcgg 469  Q
    ||||| |||||||||||||||||||| || || | |||||| ||||||||||||||||    
T  25976878 gcaggttggaaaatggtgcctctaggaaagggtttttatgattttcactttgactcgg 25976821  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 471
Target Start/End: Original strand, 3867795 - 3867947
Alignment:
Q  319 gtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggt 418  Q
    ||||| ||||| || |||||| ||||||| || |  ||||| |||| |||||||||||| |  |  || ||||||||  | || || ||| ||||| | |    
T  3867795 gtgttaagggctcgattgactcttaacaaagggggcaaaccttactctgcacgtgatcttaatattaacattggaaaaatttggaagacaacggcaagct 3867894  T
Q  419 ggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcggcg 471  Q
     ||||||||||||||| || || || |||||||||||||||||| ||||||||    
T  3867895 agaaaatggtgcctcttggtaaggggtattatgactttcacttttactcggcg 3867947  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 14434981 - 14435025
Alignment:
Q  214 tgggtctaccttttcaccgttcggatcgttgaaacaaggtctgag 258  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||    
T  14434981 tgggtctaccttttcaccgtttggatcgtcgaaacaaggcctgag 14435025  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 278 - 468
Target Start/End: Complemental strand, 10425777 - 10425587
Alignment:
Q  278 gtcaggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatct 377  Q
    ||||||||||||| || |||||  |||| || ||||| |||| ||| ||||| ||||||||| ||||| ||||||||||||||||||  ||||||||  |    
T  10425777 gtcaggaagagtaccataggggtgtagatgaatgcaagaatgcgttaagggctcgtttgactcttaactagggagataaaccatactccgcacgtgactt 10425678  T
Q  378 aagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgactcg 468  Q
    |||||| ||||| | ||| || || ||||||||||| || ||||||||||||||||| | |||| | || ||||||||||| |||||||||    
T  10425677 aagcaataaaatcgaaaaactttggaaaacatcggctggttggaaaatggtgcctctcgacaaatgttactatgactttcattttgactcg 10425587  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 280 - 465
Target Start/End: Complemental strand, 13311492 - 13311307
Alignment:
Q  280 caggaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaa 379  Q
    |||||||| || || |||||  |||| || ||||| |||||||| ||||| ||||||||| |||||||||||||||| ||||||| |||| ||||  | |    
T  13311492 caggaagactaccataggggtgtagatgaatgcaagaatgtgttaagggctcgtttgactcttaacaagggagataagccatactctgcatgtgacttga 13311393  T
Q  380 gcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgac 465  Q
    || | ||||| |||||| | || ||||||||| | || ||||||||||||||||| |||||||| || ||||||||||| ||||||    
T  13311392 gcgataaaatcggaaagatttggaaaacatcgtctggttggaaaatggtgcctctcggcaaaggttactatgactttcattttgac 13311307  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 18706404 - 18706335
Alignment:
Q  189 ttttggacagcaggttcgcaacacatgggtctaccttttcaccgttcggatcgttgaaacaaggtctgag 258  Q
    ||||||| |||||||||||||||  ||| | ||||||||||||||||||||||| ||||| |||||||||    
T  18706404 ttttggagagcaggttcgcaacatctggttttaccttttcaccgttcggatcgtcgaaaccaggtctgag 18706335  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 11781291 - 11781182
Alignment:
Q  343 aacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaag 442  Q
    |||||||| || ||||| |||| |||| |||| ||||||| |||| | |||||||| || ||||||  ||| |  ||||||||||| ||| |||||||||    
T  11781291 aacaagggtgagaaaccgtactctgcatgtgacctaagcaccaaattgggaaagctttggaaaacaatggcggcatggaaaatggttcctttaggcaaag 11781192  T
Q  443 gctattatga 452  Q
    | ||||||||    
T  11781191 gatattatga 11781182  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 319 - 467
Target Start/End: Complemental strand, 20972275 - 20972127
Alignment:
Q  319 gtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggt 418  Q
    ||||| ||||| || |||||| ||||||| || || ||||| |||| |||||||||||| || |  |||||||||||  | || || ||| ||||| | |    
T  20972275 gtgttaagggctcgattgactcttaacaaaggggacaaaccttactctgcacgtgatctcagtattaaaattggaaaaatttggaagacaacggcaagtt 20972176  T
Q  419 ggaaaatggtgcctctaggcaaaggctattatgactttcactttgactc 467  Q
    |||||||||||||||| || || || |||||||||||||||||||||||    
T  20972175 ggaaaatggtgcctcttggtaaggggtattatgactttcactttgactc 20972127  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 466
Target Start/End: Complemental strand, 19830164 - 19829984
Alignment:
Q  286 gagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagcaaca 385  Q
    ||||| || |||||| |||| || ||||| |||| | | ||||| ||||||||  ||||||| || |||||  | || |||||||||||| |||| | ||    
T  19830164 gagtaccataggggagtagaagaatgcaagaatgcgataagggctcgtttgacccttaacaaaggggataagtcgtattttgcacgtgatttaagtacca 19830065  T
Q  386 aaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctctaggcaaaggctattatgactttcactttgact 466  Q
    |||| |||||||  || |||||||||||    |||||||||||||| || |||||||| || ||| |||||||||||||||    
T  19830064 aaataggaaagcattggaaaacatcggcgacctggaaaatggtgccacttggcaaaggttactataactttcactttgact 19829984  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 429
Target Start/End: Original strand, 16313028 - 16313174
Alignment:
Q  283 gaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagca 382  Q
    |||||||| || |||||  |||| || ||||| |||| ||| || || ||||||||| || |||| |||||||| |||||||  |||||| |  ||||||    
T  16313028 gaagagtaacataggggtgtagatgaatgcaagaatgcgttaagagctcgtttgactctttacaaaggagataagccatactccgcacgtcacttaagca 16313127  T
Q  383 acaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtg 429  Q
    | | ||| |||||||| || |||||||||||||| ||||||||||||    
T  16313128 atataatcggaaagctttggaaaacatcggcaggttggaaaatggtg 16313174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 429
Target Start/End: Original strand, 18494022 - 18494168
Alignment:
Q  283 gaagagtatcaaaggggactagaggattgcaaaaatgtgttgagggcgcgtttgactattaacaagggagataaaccatactttgcacgtgatctaagca 382  Q
    |||||||| || |||||  |||| || ||||| |||| ||| || || ||||||||| || |||| |||||||| |||||||  |||||| |  ||||||    
T  18494022 gaagagtaacataggggtgtagatgaatgcaagaatgcgttaagagctcgtttgactctttacaaaggagataagccatactccgcacgtcacttaagca 18494121  T
Q  383 acaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtg 429  Q
    | | ||| |||||||| || |||||||||||||| ||||||||||||    
T  18494122 atataatcggaaagctttggaaaacatcggcaggttggaaaatggtg 18494168  T

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Target: scaffold0238 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 471
Target Start/End: Complemental strand, 1833 - 1696
Alignment:
Q  334 ttgactattaacaagggagataaaccatactttgcacgtgatctaagcaacaaaattggaaagctatgaaaaacatcggcagggtggaaaatggtgcctc 433  Q
    |||||| ||||||| || || ||||| |||| |||| ||||||| || |  |||||||||||  | || || |||  |||| | ||||||||||||||||    
T  1833 ttgactcttaacaaaggggacaaaccctactgtgcatgtgatctcagtattaaaattggaaaaatttggaagacagtggcaagatggaaaatggtgcctc 1734  T
Q  434 taggcaaaggctattatgactttcactttgactcggcg 471  Q
    | || || || |||||||||||||||||| ||||||||    
T  1733 ttggtaagggttattatgactttcactttaactcggcg 1696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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