View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_high_9 (Length: 497)
Name: NF14234_high_9
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 5 - 489
Target Start/End: Original strand, 39539758 - 39540242
Alignment:
| Q |
5 |
atgtttgtaagtcaataacctcaaaaaagtctatccaaacatgcctccagacaataaatgttacaacaagagaccgccataacacaactaagttatgaca |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39539758 |
atgtttgtaagtcaataacctcaaaaaagtctatccaaacatgcctccagacaataaatgttacaacaagagaccgccataacacaactaagttatgaca |
39539857 |
T |
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| Q |
105 |
gaaaattattaacggatataatggacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39539858 |
gaaaattattaacggatataatggacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacag |
39539957 |
T |
|
| Q |
205 |
tttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcaga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39539958 |
tttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcaga |
39540057 |
T |
|
| Q |
305 |
attttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39540058 |
attttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaa |
39540157 |
T |
|
| Q |
405 |
aatgatttagctataacaatagaatctccagcatcaagaccagttagcatattcccaagttcctccaatttctctggcctatgct |
489 |
Q |
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| T |
39540158 |
aatgatttagctataacaatagaatctccagcatcaagaccagttagcatattcccaagttcctccaatttctctggcctatgct |
39540242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 32095293 - 32095182
Alignment:
| Q |
129 |
acaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaaga |
228 |
Q |
| |
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||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| || || | |||||| || || ||||||| |||||||| | |
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| T |
32095293 |
acaaaccttccgtgcttttgaagcaaagatcgacgaaccgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaa |
32095194 |
T |
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| Q |
229 |
cttccagaggag |
240 |
Q |
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||||| |||||| |
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| T |
32095193 |
cttcctgaggag |
32095182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 128 - 477
Target Start/End: Original strand, 30910318 - 30910667
Alignment:
| Q |
128 |
gacaaaccttccatgcttttgcagcaaagatcgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaag |
227 |
Q |
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|||||||||||| ||||| |||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30910318 |
gacaaaccttccgtgcttctgcaacaaagatctgcgaacagactgggtaggatgagcagttaggaccaaatcaacagtttggctcttcaaagcatcaaag |
30910417 |
T |
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| Q |
228 |
acttccagaggagtcttcttgagttcagtcacaagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctt |
327 |
Q |
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||||| ||||| |||||||| |||| | |||||||| ||||||| ||||||||||| ||||||||||| |||||||| || |||||| ||||||| || | |
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| T |
30910418 |
acttcaagaggggtcttcttcagttgattcacaagcctcttgaaggtctcttcaatgtctgactcagtgatggcagagttctcatcaccaaaatccccct |
30910517 |
T |
|
| Q |
328 |
tcttcagtaacttgatccttcttctatatgcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaataga |
427 |
Q |
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|||| | |||||| |||||||| | || ||||||||||||||||| ||||| || ||||| ||||||||||| ||||| || || || || |||||||| |
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| T |
30910518 |
tctttaataacttaatccttctgcggtaggcaatttgaacttcttctgccaaattggccaagttaagcatgtgagaaaaagacttggcaatgacaataga |
30910617 |
T |
|
| Q |
428 |
atctccagcatcaagaccagttagcatattcccaagttcctccaatttct |
477 |
Q |
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||| |||||||||||||| || ||||| ||||| ||||||||||| |||| |
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| T |
30910618 |
atccccagcatcaagaccggtcagcatgttcccgagttcctccaacttct |
30910667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 22565024 - 22564942
Alignment:
| Q |
357 |
gcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatc |
439 |
Q |
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|||||||| || || ||||| ||||| ||||| |||||||| || ||||| ||||| || | ||||||||||||||||||||| |
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| T |
22565024 |
gcaatttggacctcctcagctaagttagccaagttaagcatatgagaaaaggatttggcaacaacaatagaatctccagcatc |
22564942 |
T |
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