View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_12 (Length: 484)
Name: NF14234_low_12
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 142 - 476
Target Start/End: Complemental strand, 11616114 - 11615777
Alignment:
| Q |
142 |
cgtgggttgaatttacataaggtttattgattaacaatattagggtttgatttaagtatatttcttcgannnnnnnnnnnnnnaatgtatcaggtgatag |
241 |
Q |
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| T |
11616114 |
cgtgggttgaatttacataaggtttattgattaacaatattagggtttgatttaagtatatttctttgattttttttttt---aatgtatcaggtgttag |
11616018 |
T |
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| Q |
242 |
atttcaagaaaaatcaaatgcatcgtgttaacttttggcttacaccaaagaatgaaaacaaggaccgaaaagcttcatcttttctcaataatgaagttgc |
341 |
Q |
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| T |
11616017 |
attttaaggaaaatcaaatgcatcgtgctaacttttggcttacaccaaagaatcaaaacaaggaccaaaaagcttcatcttttctcaataatgaagtagc |
11615918 |
T |
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| Q |
342 |
aagtcttctggattccatatctgtttcgtcttcgtcttcgt------cttcatcttcttcttgggatgaatataagcctgtgacaaatgaagacaacaca |
435 |
Q |
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| T |
11615917 |
aagtcttctggattccatatctgtttcgtcttcgtcttcgtcttcctcttcatcttcttcttgggatgaatataagcctgtgataaataaagacaacaca |
11615818 |
T |
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| Q |
436 |
agtcaacttgccccggatccacttttgcttaaacctatgct |
476 |
Q |
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| T |
11615817 |
agtcaacttgcccctgatccacttttgcttaaacctatgct |
11615777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 11616207 - 11616115
Alignment:
| Q |
22 |
attaactgtgtattttactattcttgtttggataaccttggctgtgcataattcttatttgatgaacatatgcatagatcttgagtggattaa |
114 |
Q |
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| T |
11616207 |
attaactgtgtattttactattcatgtttggaaaaccttggctgtgcataattcttatttgatgaaaatatgcatagatcttgagtggattaa |
11616115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 11605220 - 11605289
Alignment:
| Q |
225 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttggcttacaccaaagaat |
294 |
Q |
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| T |
11605220 |
aatgtatcaggtgctagatttctacgaaaatcaaatgcatcgtacaaaattttggcttacacccaagaat |
11605289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 8671695 - 8671757
Alignment:
| Q |
225 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttggcttacacc |
287 |
Q |
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| T |
8671695 |
aatgtatcaggtgctagatttctaggaaaatcaaatgcatcgtgctaaatattggcttgcacc |
8671757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 8715396 - 8715343
Alignment:
| Q |
225 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtgttaacttttg |
278 |
Q |
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| T |
8715396 |
aatgtatcaagtgctagatttctaggaaaatcaaatgcatcgtgttaaattttg |
8715343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 35078875 - 35078918
Alignment:
| Q |
225 |
aatgtatcaggtgatagatttcaagaaaaatcaaatgcatcgtg |
268 |
Q |
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| T |
35078875 |
aatgtatcaggtgctagatttctaggaaaatcaaatgcatcgtg |
35078918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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