View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_13 (Length: 470)
Name: NF14234_low_13
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 177 - 454
Target Start/End: Complemental strand, 2334271 - 2333992
Alignment:
| Q |
177 |
atagacttatggtgtaaaagtattttacattgttaaccaattaaaatcattaaattagacacgtcatcttatgttaaaatagnnnnnnn--tcatataaa |
274 |
Q |
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| T |
2334271 |
atagacttacggtgtaaaagtattttacactgttaaccaattaaaatcattaaattagacacgtcatcttatgttaaaataaaaaaaaaaatcatataaa |
2334172 |
T |
|
| Q |
275 |
tcgagctaatctacaagaaattccaatgccctcctaatcactacaatggccttgccagtctcatttttaacacaaataacgatgctatcagaaaactatt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
2334171 |
tcgagctaatctacaagaaattccaatgccctcctaatcactacaatggccttgccagtctcatttttaacacaaatgacgatgctatcagaaacctatt |
2334072 |
T |
|
| Q |
375 |
tagcatgcacactgacaatgaattcgagctttcgtcaatgttggnnnnnnnnatcatatgtctctttttaagtatcttta |
454 |
Q |
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| T |
2334071 |
tagcatgcacactgacaatgaattcgagctttcgtcaatgttggttttttttatcataggtctctttttaagtatcttta |
2333992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2334447 - 2334354
Alignment:
| Q |
1 |
agtgatgagatggtgtgtacagaaagtataatgctttgggctttcaattatatcttaagcaaattttaccatagcaatgttattttattggtaa |
94 |
Q |
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| T |
2334447 |
agtgatgagatggtgtatacagaaagtataatgcttcagactttcaattatatcttaagcaaattttaccatagcaatgttattttattggtaa |
2334354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 2414406 - 2414359
Alignment:
| Q |
200 |
tttacattgttaaccaattaaaatcattaaattagacacgtcatctta |
247 |
Q |
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| T |
2414406 |
tttacattgtcaaccaattaaaatcattcaattaaacacctcatctta |
2414359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 283 - 454
Target Start/End: Complemental strand, 47779668 - 47779497
Alignment:
| Q |
283 |
atctacaagaaattccaatgccctcctaatcactacaatggccttgccagtctcatttttaacacaaataacgatgctatcagaaaactatttagcatgc |
382 |
Q |
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| T |
47779668 |
atctacaagaaattccaatgccctcctaatcactacaatggccttgccagtctcatttttaacacaaatgacgatgctatcagaaacctatttagcatgc |
47779569 |
T |
|
| Q |
383 |
acactgacaatgaattcgagctttcgtcaatgttggnnnnnnnnatcatatgtctctttttaagtatcttta |
454 |
Q |
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| T |
47779568 |
acactgacaatgaattcgagctttcgtcaatgttggttttttttatcatatgtctctttttaagtatcttta |
47779497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 47808030 - 47807961
Alignment:
| Q |
21 |
agaaagtataatgctttgggctttcaattatatcttaagcaaattttaccatagcaatgttattttattg |
90 |
Q |
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| T |
47808030 |
agaaagtataatgcttcaggctttcaattatatcttaagcaaattttaccatagcaatgttattttattg |
47807961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 47807884 - 47807840
Alignment:
| Q |
214 |
caattaaaatcattaaattagacacgtcatcttatgttaaaatag |
258 |
Q |
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| T |
47807884 |
caattaaaatcattaaattagacacatcatcttatgttaaaatag |
47807840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 56469903 - 56469866
Alignment:
| Q |
285 |
ctacaagaaattccaatgccctcctaatcactacaatg |
322 |
Q |
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| T |
56469903 |
ctacaagaatttccaatgtcctcctaatcactacaatg |
56469866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 16939149 - 16939078
Alignment:
| Q |
188 |
gtgtaaaagtattttacattgttaaccaattaaaatcattaaattagacacgtca-tcttatgttaaaatag |
258 |
Q |
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|||||||| |||||||| ||| ||||||||||||||| |||||||||||| ||| | | |||||||||||| |
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| T |
16939149 |
gtgtaaaacaattttacactgtcaaccaattaaaatcactaaattagacacatcagtttaatgttaaaatag |
16939078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 18527095 - 18527131
Alignment:
| Q |
211 |
aaccaattaaaatcattaaattagacacgtcatctta |
247 |
Q |
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||||||||||||||||| |||||||||| |||||||| |
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| T |
18527095 |
aaccaattaaaatcattcaattagacacatcatctta |
18527131 |
T |
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