View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_14 (Length: 455)
Name: NF14234_low_14
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 21 - 440
Target Start/End: Complemental strand, 10461428 - 10461009
Alignment:
| Q |
21 |
cccaaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattagattcccat |
120 |
Q |
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| T |
10461428 |
cccaaaataaaaaagattgtgtggtcaaggtacagtatagtactatgctctgtacctaaatgtcctttatttacatgatatattgttattaaattcccat |
10461329 |
T |
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| Q |
121 |
taaattatgaatcaaataatttgatgttacaatcattttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatag |
220 |
Q |
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| T |
10461328 |
taaattatgaatcaaataatttgatgttacaatcattttatggccagactcattgatgaataggaaagcagaatccaataatcaaaatttcaaactatag |
10461229 |
T |
|
| Q |
221 |
aagcttacgtgtaaatttgatatttggaatttcaaacataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttagg |
320 |
Q |
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| T |
10461228 |
aagcttacgtgtaaatttgatatttggaatttcaaacataatagatggtgttttgcttgtcgtcctaatttcctatgctatcttttggttttcggttagg |
10461129 |
T |
|
| Q |
321 |
ccttttaatttgttccccttctttagtagtattaggcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaa |
420 |
Q |
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| T |
10461128 |
ccttttaatttgttccccttctttagtagtattaggcatctgtgtgtctgctattcatgtataaaattgaacttttaaaattaaaaggtataaaattgaa |
10461029 |
T |
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| Q |
421 |
aagctaatcttgtccctatg |
440 |
Q |
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| T |
10461028 |
aagctaatcttgtccctatg |
10461009 |
T |
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