View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_18 (Length: 427)
Name: NF14234_low_18
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 21800882 - 21801276
Alignment:
| Q |
18 |
aagataaccaataaatatgcaaggattattctttttaatataaaatgtcaagttaaaaatataaatattattaggggttaatatatgtacgtcttgtgtg |
117 |
Q |
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| T |
21800882 |
aagataaccaataaaattgcaaggatcattctttttaatataaaatgtcaagtgaaaaatataaatattattaggggttaatatatgtacgtcttgtgtg |
21800981 |
T |
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| Q |
118 |
gggttcttttggttattaatatatgtgctatttcgaaaaat-aattatataaatatgattaatgaacaaatcaatggataatattatatgaacttaaatt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21800982 |
ggggtcttttggttattaatatatgtgctatttcgaaaaaacaattatataaatatgattaatgaacaaatcaatggataatattatatgaacttaaatt |
21801081 |
T |
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| Q |
217 |
actaattatattcggttcaaataccaactatttaattcttaacaatacccctnnnnnnnttaacattactaattcttaatttcttttaacattactagct |
316 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21801082 |
actaattatattcggttcaaataccgattatttaattcttaacaatacccctaaaaaaattaacattactaattcttaatttcttttaacattactagct |
21801181 |
T |
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| Q |
317 |
acttaattaagcttgtaacataaaaagctactcaaagtcaaatccaaagcaactactatttagacttatagaaataactgtattatccttcttac |
411 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21801182 |
acttaattaagcttgtaacataaaaaactactcaaagtcaaatccaaagcaactactatttagacttatagaaataactgtattatccttcttac |
21801276 |
T |
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