View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_19 (Length: 419)
Name: NF14234_low_19
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 5039282 - 5039668
Alignment:
| Q |
13 |
aaaatgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcatctgcatggtgcggcagtttgtaaagctgttggatttagacaga |
112 |
Q |
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| T |
5039282 |
aaaatgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcttctgcatggtgcggcagtttgtaaagctgttggatttagacaga |
5039381 |
T |
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| Q |
113 |
agaatttctatctttaaatccaacggtactacaagccgatgcaccacacaacgactatagatgatccctacacacacatataaataagagatacataaga |
212 |
Q |
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| T |
5039382 |
aaaatttctctctttaaatccaacggtactacaagccggtgcaccacacaacgactatagatgatccctacacacacatataaataagagatacataaga |
5039481 |
T |
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| Q |
213 |
cttggaaactctccagctccctccatcccgtccagtatcacttaacagttggattatttaacgacctagttttgatctgttaaccattctcggataacat |
312 |
Q |
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| T |
5039482 |
cttggaaactctccagctccctccatcccgtccagtatcacttaacagttggattatttaacgacctagttttgatctcttaaccattctcggataacat |
5039581 |
T |
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| Q |
313 |
tttgttagaggaaaatggggcttcggacatatgcagacacatattcatgcttaataaaaaggtaaaattttgaatcaacacaggaat |
399 |
Q |
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| T |
5039582 |
tttgttagaggaaaatggggcttcggacatatgcagacacatattcatgcttaataaaaaggtaaaattttgaatcaacacaggaat |
5039668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 336
Target Start/End: Original strand, 5033502 - 5033819
Alignment:
| Q |
13 |
aaaatgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcatctgcatggtgcggcagtttgtaaagctgttggatttagacaga |
112 |
Q |
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| T |
5033502 |
aaaatgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcgtgcatgggacggtgatttgtaaaattgttggatttagacaga |
5033601 |
T |
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| Q |
113 |
--agaatttctatctttaaatccaacggtactacaagccgatgcaccacacaacgactatagatgatccctacacacacatataaataagagatacataa |
210 |
Q |
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| T |
5033602 |
gaaaaatttatatcttcatatccaatggttctacaagccgatgcaccacacagcgtctata--tgatctc--cacacacatatacataagtgatacataa |
5033697 |
T |
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| Q |
211 |
gacttggaaactctccagctccctccatcccgtccagtatcacttaacagttggatt-atttaacgacctagttttgatctgttaaccattctcggataa |
309 |
Q |
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| T |
5033698 |
gacttggatactctcca----actccatcccgtccagtatcacttaacagttggattaatttaacgacgt-gtcctgatctcttaaccgttaacggctaa |
5033792 |
T |
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| Q |
310 |
cattttgttagaggaaaatggggcttc |
336 |
Q |
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| T |
5033793 |
gattttgttggaggaaataggggcttc |
5033819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 5033973 - 5034015
Alignment:
| Q |
353 |
atattcatgcttaataaaaaggtaaaattttgaatcaacacag |
395 |
Q |
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| T |
5033973 |
atattcatgcttaataaaaaggtaaaattttgaatcaacacag |
5034015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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