View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_2 (Length: 706)
Name: NF14234_low_2
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_2 |
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| [»] scaffold0393 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 369 - 692
Target Start/End: Original strand, 30598830 - 30599152
Alignment:
| Q |
369 |
aacttcttcaatgtctcttggctccccggtcgagctaccgtggttcacattaatgcagcatgtattctagaggatctgaatttggcctttatgatattac |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30598830 |
aacttcttcaatgtctcttggctccccggtcgagctaccgtggttcacattaatgcagcatgtattctagaggatctgaatttggcctttatgatattac |
30598929 |
T |
|
| Q |
469 |
tgtgaagaaagatgaacaaataaaaggaaaaaagaagaatacaatgatggataaagctgtttcattttaataagtgattacataagnnnnnnngggtgca |
568 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
30598930 |
tgtgaagaaagatgaacaaataaaaggaaaaaagaaaaatacaatgatggataaagctgtttcattttaataagtgattacataag-ttttttgggcgca |
30599028 |
T |
|
| Q |
569 |
atgatacaccaccatgcaaagtaaaaacatagtaaagatgttggattacatttgagtatcaaagactgaaaatgaacactgctcccttcatatgacggct |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30599029 |
atgatacaccaccatgcaaagtaaaaacatagtaaagatgttggattacatttgagtatcaaagactgaaaatgaacactgctcccttcatatgacggct |
30599128 |
T |
|
| Q |
669 |
acaaggagcgtgaagatatatatg |
692 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
30599129 |
acaaggagcgtgaagatatatatg |
30599152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 30598471 - 30598834
Alignment:
| Q |
1 |
ctctgtgtaaggccatacactttcttgttgtgtttttatttttcttattcaattaattataagcattcttatcactctaagctgaagtatacaataaatg |
100 |
Q |
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| T |
30598471 |
ctctgtgtaaggccatacactttcttgctgtgtttttatttttcttattcaattaattataagcattcttatcactctaagctgaagtatacaataaatg |
30598570 |
T |
|
| Q |
101 |
tacattgtatgtgtgcgtgtgtttttcagtgtaaac------------------ttgctgcataatttggatcatagattgaagtcaaggtatctgatga |
182 |
Q |
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| T |
30598571 |
tgcattgtatgtgtgcgtgtgtttttcagtgtaaacatcaattagctgcaagatttgctgcataattaggatcatagattgaagtcaaggtatctgatga |
30598670 |
T |
|
| Q |
183 |
ggaattagctttgttgctatccaaactatagcccttttgttattcaacattggcggttatcaactttatacattattccttaaaatgtctaatgcatcat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
30598671 |
ggaattagctttgttgctatccaaactatagcccttttgttactcaacattggcggttatcaacttcatacattattccttaaaatgcctaatgcatcat |
30598770 |
T |
|
| Q |
283 |
gtttgttgaatatgcaaatgttagtaagttagtagctatattagttgccagggttccagaactt |
346 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30598771 |
gtttgttgaatatgcaaatgttagtaagttagtagttatattagttgccagggttccagaactt |
30598834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 222 - 621
Target Start/End: Original strand, 2410958 - 2411352
Alignment:
| Q |
222 |
ttattcaacattggcggttatcaactttatacattattccttaaaatgtct-aatgcatcatgtttgttgaatatgcaaatgttagtaagttagtagcta |
320 |
Q |
| |
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|||||||||||||||||||| | ||| ||| ||||||||||||||| || |||||||||||||||||| |||||||| ||||||||| ||||||| || |
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| T |
2410958 |
ttattcaacattggcggttaaaaccttcataagttattccttaaaatgccttaatgcatcatgtttgttgcatatgcaagtgttagtaa-ttagtagtta |
2411056 |
T |
|
| Q |
321 |
tattagttgccagggttccagaacttgaactctggatgtcattcttaaaacttcttcaatgtctcttggctccccggtcgagctaccgtggttcacatta |
420 |
Q |
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| |||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||| ||| ||| |||||||||||||| |||||||| |
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| T |
2411057 |
tgttagtttccagggttccagagcttggactctggatgtcatttttaaaacttcttcaatgtttcttaactcaccgatcgagctaccgtggctcacatta |
2411156 |
T |
|
| Q |
421 |
atgcagcatgtattctagaggatctgaatttggcctttatgatattactgtgaagaaagatgaacaaataaaaggaaaaaagaagaatacaatgatggat |
520 |
Q |
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||||| |||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |||| ||| ||||||| |
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| T |
2411157 |
atgcatcatgtattttagaagatatgaatttggcctttataatattactgtgaagaaagatgaacaaagaaaaagaataaagacgaatgcaaagatggat |
2411256 |
T |
|
| Q |
521 |
aaagctgtttcattttaataagtgattacataagnnnnnnngggtgcaatgatacaccaccatgcaaagtaaaaacatagtaaagatgttggattacatt |
620 |
Q |
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||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||| | || ||||||||||||||||||||||||||||| |
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| T |
2411257 |
gaagctatttcattttaataagtgattacataag-ttttttgggtgctatgata---caccatgtagtgt-aaaacatagtaaagatgttggattacatt |
2411351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 2410587 - 2410672
Alignment:
| Q |
135 |
acttgctgcataatttggatcatagattgaagtcaaggtatctgatgaggaattagctttgttgctatccaaactatagccctttt |
220 |
Q |
| |
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||||||||||| ||| |||||||| | |||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |
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| T |
2410587 |
acttgctgcatcattaggatcatacgtcgaagtcaaggtatctgatgaagaattagctttgttgctatctaaaatatagccctttt |
2410672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 624 - 660
Target Start/End: Original strand, 2411380 - 2411416
Alignment:
| Q |
624 |
gtatcaaagactgaaaatgaacactgctcccttcata |
660 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
2411380 |
gtatcaaagactgaaaaagaacactgctcccttcata |
2411416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2410427 - 2410565
Alignment:
| Q |
1 |
ctctgtgtaaggccata--cactttcttgttgtgtttttattt-ttcttattcaattaattataagcattctta---tcactctaa-gctgaagtataca |
93 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| |||| ||| ||| ||||||||| ||||||| |||||||| ||| |||| ||||||||||||| |
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| T |
2410427 |
ctctgtgtaagaccatatacacttccttgttgtcttttattttcttcatattcaattcattataaacattcttagtatcattctagtgctgaagtataca |
2410526 |
T |
|
| Q |
94 |
ataaatgtacattgtatgtgtgcgtgtg-tttttcagtg |
131 |
Q |
| |
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|| ||||| |||||| || ||| ||||| |||||||||| |
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| T |
2410527 |
atcaatgtgcattgtgtgcgtgtgtgtgttttttcagtg |
2410565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 222 - 551
Target Start/End: Original strand, 13341 - 13668
Alignment:
| Q |
222 |
ttattcaacattggcggttatcaactttatacattattccttaaaatgtct-aatgcatcatgtttgttgaatatgcaaatgttagtaagttagtagcta |
320 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||| |||||||| || |||||||||||||||||| | ||| | ||||||||||| ||||| || |
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| T |
13341 |
ttattcaacattggcggttaacaacttcatacattattctttaaaatgccttaatgcatcatgtttgttggacatgta--tgttagtaagtcagtagtta |
13438 |
T |
|
| Q |
321 |
tattagttgccagggttccagaacttgaactctggatgtcattcttaaaacttcttcaatgtctcttggctccccggtcgagctaccgtggttcacatta |
420 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||| | | |||||||||||||| | || || |
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| T |
13439 |
ggttagttttcagggttccagagcttgaactctggatgtcattcttata-cttcttcaatgtctcttaactcacagatcgagctaccgtggcttgcaata |
13537 |
T |
|
| Q |
421 |
atgcagcatgtattctagaggatctgaatttggcctttatgatattactgtgaagaaagatgaacaaataaaaggaaaaaagaagaatacaatgatggat |
520 |
Q |
| |
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||||| |||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| || ||| ||| ||||||| |
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| T |
13538 |
atgcatcatgtagtttagaggatctgaatttggcctttatgatattactgtcaagaaagatgaacaaaagaaaaaagaaaaaaaaaatgcaaagatggat |
13637 |
T |
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| Q |
521 |
aaagctgtttcattttaataagtgattacat |
551 |
Q |
| |
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||| |||||||||||||||||||||||||| |
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| T |
13638 |
gaagttgtttcattttaataagtgattacat |
13668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 12968 - 13056
Alignment:
| Q |
139 |
gctgcataatttggatcatagattgaagtcaaggtatctgatgaggaattagc-tttgttgctatccaaactatagcccttttgttatt |
226 |
Q |
| |
|
||||||| ||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||| |
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| T |
12968 |
gctgcatcattaggatcatatgtcgaagtcaaggtatctgatgaggaattagcttttgttgctatctaaaatatagcccttttattatt |
13056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 222 - 386
Target Start/End: Complemental strand, 39960160 - 39960001
Alignment:
| Q |
222 |
ttattcaacattggcggttatcaactttatacattattccttaaaatgtctaat-gcatcatgtttgttgaatatgcaaatgttagtaagttagtagcta |
320 |
Q |
| |
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||||| ||||||||| |||| |||||||||||||||||| || ||||| || || ||||||||||||||| ||| ||| |||||||| ||| || |
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| T |
39960160 |
ttatttaacattggcagttaacaactttatacattattcattcaaatgccttattgcatcatgtttgttggatagtcaa------gtaagttattagtta |
39960067 |
T |
|
| Q |
321 |
tattagttgccagggttccagaacttgaactctggatgtcattcttaaaacttcttcaatgtctct |
386 |
Q |
| |
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| |||| | || |||||| | |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39960066 |
tggtagtgtctagtgttccaaagcttgaactctggatgtcattcttaaaacttcttcggtgtctct |
39960001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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