View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14234_low_20 (Length: 412)
Name: NF14234_low_20
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 4671302 - 4670907
Alignment:
| Q |
1 |
aggaacattatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggttatgagagaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4671302 |
aggaacattatgaacattgtggagtcatgttgataacttgttacccaaacaaaatgggccttaaacattaggtcgaagtgttagggttatgagagaagtt |
4671203 |
T |
|
| Q |
101 |
ttttgtgaaaaaattatcattttagcataacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaacacctgaaaagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4671202 |
ttttgtgaaaaaattatcattttagcatgacaatctcaatgagtagtttttgattaaattattaatgacaagtctcataagttaaacacctgaaaggaat |
4671103 |
T |
|
| Q |
201 |
tttagtaacacttttggagcatgcattaactttgatcatcaagctcacaataaaccagcatctctacaatgtccatgtgaacacgaacagaacaatgcta |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4671102 |
tctagtaacacttttggagcatgcattaactttgatcatcaagctcacaataaatcagcatctctacaatgtcaatgtgaacacgaacagaacaatgcta |
4671003 |
T |
|
| Q |
301 |
gccacagggaagaggtagcttagctgccttttatttgatctaaatgagacttgtgtcttcctccatcctatgcatagatgatagagtggtactaac |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4671002 |
gccacagggaagaggtagcttagctgccttttatttgatctaaatgagacttgtgtcttcctccatcctatgcatagatgatagagtggtactaac |
4670907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 396
Target Start/End: Complemental strand, 4670316 - 4670208
Alignment:
| Q |
288 |
cagaacaatgctagccacagggaagaggtagcttagctgccttttatttgatctaaatgagacttgtgtcttcctccatcctatgcatagatgatagagt |
387 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4670316 |
cagagcaatgctagccacaggggagaagtagcttagcagccttttatttgatctaaatgagacttgtgtcttcctccttcctatgcatagatgatagagt |
4670217 |
T |
|
| Q |
388 |
ggtactaac |
396 |
Q |
| |
|
|||||||| |
|
|
| T |
4670216 |
cgtactaac |
4670208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University