View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14234_low_21 (Length: 408)

Name: NF14234_low_21
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14234_low_21
NF14234_low_21
[»] chr6 (2 HSPs)
chr6 (2-393)||(6354660-6355051)
chr6 (345-388)||(3108191-3108234)
[»] chr1 (2 HSPs)
chr1 (345-393)||(16316278-16316326)
chr1 (345-385)||(4064141-4064181)
[»] chr3 (1 HSPs)
chr3 (345-387)||(32072742-32072784)
[»] chr4 (2 HSPs)
chr4 (346-393)||(45654879-45654926)
chr4 (345-382)||(5580301-5580338)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 2 - 393
Target Start/End: Original strand, 6354660 - 6355051
Alignment:
Q  2 cctctattggattccagccactccggcctaatttactcttaaatcaactaataatttactattgagtagccatcataatcaaataagaatgtgttctaat 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  6354660 cctctattggattccagccactcctgcctaatttactcttaaatcaactaataatttgctattgggtagccatcataatcaaataagaatgtgttctaat 6354759  T
Q  102 cttttgaggatggctcatggtaaattactcactaacatagagcgttgtcactaaggtatgtctattgataatctttgccctacaagatctcaagcaagac 201  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354760 catttgaggatggctcatggtaaattactcactaacatagagcgttgtcactaaggtatgtctattgataatctttgccctacaagatctcaagcaagac 6354859  T
Q  202 attcgggattgtgacaacgttaaacccttatgaaatagagtgatcattcaaaacatatgaaataagnnnnnnnagtcttggcactttatttgttaatctt 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  6354860 attcgggattatgacaacgttaaacccttatgaaatagagtgatcattcaaaacatatgaaataagtttttttagtcttggcactttatttgttaatctt 6354959  T
Q  302 gaaaatacaaattattacttttgtcgatacaataatacttcctctttttaatataaacttactacttttaatattttaaccaatgttttaaa 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6354960 gaaaatacaaattattacttttgtcgatacaataatacttcctctttttaatataaacttactacttttaatattttaaccaatgttttaaa 6355051  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 3108191 - 3108234
Alignment:
Q  345 ctttttaatataaacttactacttttaatattttaaccaatgtt 388  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  3108191 cttttttatataaacttacttcttttaatattttaaccaatgtt 3108234  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 16316278 - 16316326
Alignment:
Q  345 ctttttaatataaacttactacttttaatattttaaccaatgttttaaa 393  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  16316278 ctttttaatataaacttactacttttaatatttcaaccaatgttctaaa 16316326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 4064181 - 4064141
Alignment:
Q  345 ctttttaatataaacttactacttttaatattttaaccaat 385  Q
    |||||||||  ||||||||||||||||||| ||||||||||    
T  4064181 ctttttaattcaaacttactacttttaatactttaaccaat 4064141  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 32072784 - 32072742
Alignment:
Q  345 ctttttaatataaacttactacttttaatattttaaccaatgt 387  Q
    |||||||||||||| |||||||||||| |||||||||||||||    
T  32072784 ctttttaatataaatttactacttttagtattttaaccaatgt 32072742  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 45654879 - 45654926
Alignment:
Q  346 tttttaatataaacttactacttttaatattttaaccaatgttttaaa 393  Q
    |||||| ||||||||||| ||||||| |||||||||||||||| ||||    
T  45654879 tttttattataaacttacaacttttagtattttaaccaatgttctaaa 45654926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Complemental strand, 5580338 - 5580301
Alignment:
Q  345 ctttttaatataaacttactacttttaatattttaacc 382  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  5580338 ctttttaatataaactttctacttttagtattttaacc 5580301  T

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