View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14234_low_24 (Length: 376)
Name: NF14234_low_24
Description: NF14234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14234_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 37622101 - 37622434
Alignment:
| Q |
1 |
ttttttgtgtgtgaagacaaacagtgatttatgaaacgtaataaactaattaatgtagataaaatacatatatgtatcatacaattaataacaaaaataa |
100 |
Q |
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| T |
37622101 |
ttttgtgtgtgtgaagacaaacagtgatttatgaaacgtaataaactaattaatgtagataaaatacatata----------------------aactaa |
37622178 |
T |
|
| Q |
101 |
ttaattatatgacgagcggacgcatattaaaaaaataatattgtgcttgaccnnnnnnnnnnnnnnntaatattgttcttaatttatttaaagataaagc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
37622179 |
ttaattatatgacgagcggacacatattaaaaaaataatattgtgcttgaccaaaaaaataaaaaa-taatattgttcttaatttatttaaagctaaagc |
37622277 |
T |
|
| Q |
201 |
taagggaaataaaagctcccatgcaattgagaaataagagagattgatttaattaagaaaagaagcctaagcatatactaatattcaatattgaatcaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
37622278 |
taagggaaataaaagctcccatgcaattgagaaataagagagattgatttaattaagaaaagaaacctaagcatatact-atattcaatattgaatcaag |
37622376 |
T |
|
| Q |
301 |
atgccaagcatgcttcccagaacctcctattcttttccatctcatccatcgattcatg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37622377 |
atgccaagcatgcttcccagaacctcctattcttttccatctcatccatcgattcatg |
37622434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39986994 - 39986860
Alignment:
| Q |
1 |
ttttttgtgtgtgaagacaaacagtgatttatgaaacgtaataaactaattaatgtagataaaatacatatatgtatcatacaattaataacaaaaataa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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| T |
39986994 |
ttttgtgtgtgtgaagacaaacagtgatttatgaaacgtaataaactaattaatgtagataaaatac--atatgtgtcatgcaattaataacaaaaataa |
39986897 |
T |
|
| Q |
101 |
t--taattatatgacgag-cggacgcatattaaaaaa |
134 |
Q |
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| | |||||||| |||| |||| |||||||||||| |
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| T |
39986896 |
taattattatatggcgagagggacacatattaaaaaa |
39986860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 39986809 - 39986707
Alignment:
| Q |
255 |
aagaaaagaagcctaagcatatactaatattcaatattgaatcaagatgccaagcatgcttcccagaacctcctattcttttccatctcatccatcgatt |
354 |
Q |
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|||||||| |||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39986809 |
aagaaaagcagcctaagcaaatactac-attcaatattgaatcaagatgccaaacaagcttcccagaacctcctattcttttccatctcatccatcgact |
39986711 |
T |
|
| Q |
355 |
catg |
358 |
Q |
| |
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|||| |
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|
| T |
39986710 |
catg |
39986707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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